miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24372 3' -58.8 NC_005264.1 + 162429 0.66 0.839961
Target:  5'- gGGCgCGAAGCCUACGUcucugguaGUCCG-CAacuCCa -3'
miRNA:   3'- -CUGgGCUUCGGAUGCG--------CGGGCaGU---GG- -5'
24372 3' -58.8 NC_005264.1 + 161493 0.66 0.815445
Target:  5'- aGACaCCGGgcucaGGUCUGCGUGucCCCGcUCGCUg -3'
miRNA:   3'- -CUG-GGCU-----UCGGAUGCGC--GGGC-AGUGG- -5'
24372 3' -58.8 NC_005264.1 + 158629 0.67 0.780601
Target:  5'- cGCCuagCGAAGCUUGCGUGgcaaaccuCCCGUC-CCu -3'
miRNA:   3'- cUGG---GCUUCGGAUGCGC--------GGGCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 158390 0.7 0.586908
Target:  5'- cGCCUaugGGAGCCguauaugccCGcCGCCCGUCACUa -3'
miRNA:   3'- cUGGG---CUUCGGau-------GC-GCGGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 158214 0.67 0.795685
Target:  5'- cGGCCCGGcgauuuucgagaacGcGCCUACGcCGCCgCGgCGCUg -3'
miRNA:   3'- -CUGGGCU--------------U-CGGAUGC-GCGG-GCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 157791 0.67 0.770646
Target:  5'- cGACCCcu-GCCagaagggUACGUGCCuCGUC-CCg -3'
miRNA:   3'- -CUGGGcuuCGG-------AUGCGCGG-GCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 157570 0.66 0.831958
Target:  5'- cGCCaCGAGGCCgggcuuggGCGCuucCCCGUaGCCc -3'
miRNA:   3'- cUGG-GCUUCGGa-------UGCGc--GGGCAgUGG- -5'
24372 3' -58.8 NC_005264.1 + 156828 0.77 0.24764
Target:  5'- -cCCCGGAGCCUcCcCGCCCGUCgggGCCg -3'
miRNA:   3'- cuGGGCUUCGGAuGcGCGGGCAG---UGG- -5'
24372 3' -58.8 NC_005264.1 + 155985 0.66 0.831148
Target:  5'- aGCCCGcacgacaGAGgUUGCGCGCUgG-CGCCa -3'
miRNA:   3'- cUGGGC-------UUCgGAUGCGCGGgCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 155086 0.69 0.636447
Target:  5'- uGCCCGAcuGCCgACGCggagaGCCCGUUuCCg -3'
miRNA:   3'- cUGGGCUu-CGGaUGCG-----CGGGCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 154899 0.66 0.807806
Target:  5'- aGACgCCGcGGCCguggacgacgcguggACGCGCgCGUUGCUa -3'
miRNA:   3'- -CUG-GGCuUCGGa--------------UGCGCGgGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 154451 0.68 0.743755
Target:  5'- aGCuCCGGcAGCUUcaACGCGCCgCGUCcggcGCCg -3'
miRNA:   3'- cUG-GGCU-UCGGA--UGCGCGG-GCAG----UGG- -5'
24372 3' -58.8 NC_005264.1 + 153219 0.68 0.724746
Target:  5'- cGACCaGAucuGGCCUGCucaGCGCaguucgCGUCGCCu -3'
miRNA:   3'- -CUGGgCU---UCGGAUG---CGCGg-----GCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 152958 0.67 0.753125
Target:  5'- gGGCUgGGaaGGCCgugGCGCGCCgGgaccgCGCCc -3'
miRNA:   3'- -CUGGgCU--UCGGa--UGCGCGGgCa----GUGG- -5'
24372 3' -58.8 NC_005264.1 + 149384 0.66 0.815445
Target:  5'- -cCCCGcagGAGCCccuucgGCGcCGCCgCGUCGCg -3'
miRNA:   3'- cuGGGC---UUCGGa-----UGC-GCGG-GCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 148934 0.67 0.771557
Target:  5'- -uCCUGGAcGUUcGCGC-CCCGUCGCCu -3'
miRNA:   3'- cuGGGCUU-CGGaUGCGcGGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 147248 0.67 0.771557
Target:  5'- --gCCGGAGCCgcaGCuGCGCCCGcaagcuUgGCCa -3'
miRNA:   3'- cugGGCUUCGGa--UG-CGCGGGC------AgUGG- -5'
24372 3' -58.8 NC_005264.1 + 147078 0.67 0.762396
Target:  5'- cGCCCGGAGCC-ACGCucGCgCG-CACa -3'
miRNA:   3'- cUGGGCUUCGGaUGCG--CGgGCaGUGg -5'
24372 3' -58.8 NC_005264.1 + 146446 0.67 0.798306
Target:  5'- -cCCCGAGuGCCaAUGCGCCaCGggCAUCc -3'
miRNA:   3'- cuGGGCUU-CGGaUGCGCGG-GCa-GUGG- -5'
24372 3' -58.8 NC_005264.1 + 145700 0.68 0.734292
Target:  5'- -gUCCGAc-CCUGCGCGCCCaa-GCCu -3'
miRNA:   3'- cuGGGCUucGGAUGCGCGGGcagUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.