miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24372 3' -58.8 NC_005264.1 + 83396 0.66 0.843113
Target:  5'- cGCUCGucGUCUGCGCGCCgCGggucguugagaaucgUCAUCc -3'
miRNA:   3'- cUGGGCuuCGGAUGCGCGG-GC---------------AGUGG- -5'
24372 3' -58.8 NC_005264.1 + 142622 0.66 0.80695
Target:  5'- cGCgCGggGCCacaUGCGUGCCaCGaUACCc -3'
miRNA:   3'- cUGgGCuuCGG---AUGCGCGG-GCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 102838 0.66 0.80695
Target:  5'- uGGgCCGcGGCC-ACGCGgCCGUCucgcucgcgGCCa -3'
miRNA:   3'- -CUgGGCuUCGGaUGCGCgGGCAG---------UGG- -5'
24372 3' -58.8 NC_005264.1 + 128701 1.12 0.001186
Target:  5'- cGACCCGAAGCCUACGCGCCCGUCACCa -3'
miRNA:   3'- -CUGGGCUUCGGAUGCGCGGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 36958 0.66 0.831148
Target:  5'- aGCCCGcacgacaGAGgUUGCGCGCUgG-CGCCa -3'
miRNA:   3'- cUGGGC-------UUCgGAUGCGCGGgCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 87747 0.66 0.823783
Target:  5'- cGGCgCCGgcGCCUGCcgcaGCGCCgCGaagaACCa -3'
miRNA:   3'- -CUG-GGCuuCGGAUG----CGCGG-GCag--UGG- -5'
24372 3' -58.8 NC_005264.1 + 3264 0.66 0.823783
Target:  5'- cGCuCCaGGAGCCgcaGCGCCaCGUC-CCu -3'
miRNA:   3'- cUG-GG-CUUCGGaugCGCGG-GCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 1932 0.66 0.823783
Target:  5'- -cUCCGGcaagAGUCUguGCGCGgCCGUUGCCc -3'
miRNA:   3'- cuGGGCU----UCGGA--UGCGCgGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 223 0.66 0.815445
Target:  5'- -cCCCGAucGCUUucCGUGCCUGgCGCCa -3'
miRNA:   3'- cuGGGCUu-CGGAu-GCGCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 154899 0.66 0.807806
Target:  5'- aGACgCCGcGGCCguggacgacgcguggACGCGCgCGUUGCUa -3'
miRNA:   3'- -CUG-GGCuUCGGa--------------UGCGCGgGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 106959 0.66 0.815445
Target:  5'- gGAUCUGAGGCCUguuGCGCuGUCUGaUC-CCa -3'
miRNA:   3'- -CUGGGCUUCGGA---UGCG-CGGGC-AGuGG- -5'
24372 3' -58.8 NC_005264.1 + 30357 0.66 0.815445
Target:  5'- -cCCCGcagGAGCCccuucgGCGcCGCCgCGUCGCg -3'
miRNA:   3'- cuGGGC---UUCGGa-----UGC-GCGG-GCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 43402 0.66 0.839961
Target:  5'- gGGCgCGAAGCCUACGUcucugguaGUCCG-CAacuCCa -3'
miRNA:   3'- -CUGgGCUUCGGAUGCG--------CGGGCaGU---GG- -5'
24372 3' -58.8 NC_005264.1 + 42466 0.66 0.815445
Target:  5'- aGACaCCGGgcucaGGUCUGCGUGucCCCGcUCGCUg -3'
miRNA:   3'- -CUG-GGCU-----UCGGAUGCGC--GGGC-AGUGG- -5'
24372 3' -58.8 NC_005264.1 + 21251 0.66 0.839961
Target:  5'- cGGCUCG-AGUgUGCGCGCCgCGgaggugguaaCGCCa -3'
miRNA:   3'- -CUGGGCuUCGgAUGCGCGG-GCa---------GUGG- -5'
24372 3' -58.8 NC_005264.1 + 103201 0.66 0.823783
Target:  5'- uGCUCGcuGCUUGCGaGCCCGcaCACCu -3'
miRNA:   3'- cUGGGCuuCGGAUGCgCGGGCa-GUGG- -5'
24372 3' -58.8 NC_005264.1 + 97388 0.66 0.812065
Target:  5'- aGGCCCGcAGGCCgugcagagucaaaACGUGCUCGaCACa -3'
miRNA:   3'- -CUGGGC-UUCGGa------------UGCGCGGGCaGUGg -5'
24372 3' -58.8 NC_005264.1 + 139423 0.66 0.80695
Target:  5'- gGGCaCCGcuGGCgUACGCGUgcucggCCGUCACa -3'
miRNA:   3'- -CUG-GGCu-UCGgAUGCGCG------GGCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 157570 0.66 0.831958
Target:  5'- cGCCaCGAGGCCgggcuuggGCGCuucCCCGUaGCCc -3'
miRNA:   3'- cUGG-GCUUCGGa-------UGCGc--GGGCAgUGG- -5'
24372 3' -58.8 NC_005264.1 + 53567 0.66 0.823783
Target:  5'- aGCUCGcGGUacgACGCGCCCGaCGCg -3'
miRNA:   3'- cUGGGCuUCGga-UGCGCGGGCaGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.