Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24374 | 5' | -55.4 | NC_005264.1 | + | 121913 | 0.66 | 0.926697 |
Target: 5'- gGGGCGCgGCGCGGcgGGgaggGCGacGGCGAg -3' miRNA: 3'- -UUCGCG-CGCGUUuaUCa---CGCc-CUGCU- -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 15761 | 0.66 | 0.926697 |
Target: 5'- -uGUGCGCGCGAgcGUGGcucCGGG-CGAg -3' miRNA: 3'- uuCGCGCGCGUU--UAUCac-GCCCuGCU- -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 50818 | 0.66 | 0.926697 |
Target: 5'- -cGCGCGCGCAGGUu-UGCGuguaGACGu -3' miRNA: 3'- uuCGCGCGCGUUUAucACGCc---CUGCu -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 2887 | 0.66 | 0.926697 |
Target: 5'- gGGGCGCgGCGCGGcgGGgaggGCGacGGCGAg -3' miRNA: 3'- -UUCGCG-CGCGUUuaUCa---CGCc-CUGCU- -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 93945 | 0.66 | 0.92118 |
Target: 5'- --uCGCGCGCAGcggAGUGUGGaaaGCGAu -3' miRNA: 3'- uucGCGCGCGUUua-UCACGCCc--UGCU- -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 100935 | 0.66 | 0.915419 |
Target: 5'- uAGCGCGCGCcguGAUAGacgGCaGGAUu- -3' miRNA: 3'- uUCGCGCGCGu--UUAUCa--CGcCCUGcu -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 3666 | 0.66 | 0.915419 |
Target: 5'- uGGGgGCGacugGCAu-UGGUGCGGGGCc- -3' miRNA: 3'- -UUCgCGCg---CGUuuAUCACGCCCUGcu -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 96533 | 0.66 | 0.915419 |
Target: 5'- -cGC-CGCGCAAcaggAGUGCaGGGACc- -3' miRNA: 3'- uuCGcGCGCGUUua--UCACG-CCCUGcu -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 70590 | 0.66 | 0.915419 |
Target: 5'- aGAGCGCGCuugGCGAGgcgGGccuucagagcaUGCuGGACGAg -3' miRNA: 3'- -UUCGCGCG---CGUUUa--UC-----------ACGcCCUGCU- -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 145253 | 0.66 | 0.909415 |
Target: 5'- aAAGCGCGCGUAGAUgauuGGUauuGCuGGcACGGg -3' miRNA: 3'- -UUCGCGCGCGUUUA----UCA---CGcCC-UGCU- -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 79805 | 0.66 | 0.909415 |
Target: 5'- ---aGUGCGCAAcgAGgccccUGCGGcGACGAa -3' miRNA: 3'- uucgCGCGCGUUuaUC-----ACGCC-CUGCU- -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 109824 | 0.66 | 0.903168 |
Target: 5'- -cGUGCGUGCAGGU--UGCGGaGGCa- -3' miRNA: 3'- uuCGCGCGCGUUUAucACGCC-CUGcu -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 146772 | 0.66 | 0.903168 |
Target: 5'- cAAGCGcCGCGCGgcGGUucucGGUGCGGcgguGugGAu -3' miRNA: 3'- -UUCGC-GCGCGU--UUA----UCACGCC----CugCU- -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 135570 | 0.66 | 0.90253 |
Target: 5'- gAAGcCGCGCGUcgcucgcgacuacGGGUGG-GuCGGGACGGu -3' miRNA: 3'- -UUC-GCGCGCG-------------UUUAUCaC-GCCCUGCU- -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 84927 | 0.66 | 0.896683 |
Target: 5'- uGGCuGCGCGCucuguuGUAGUGUGGcGcCGGg -3' miRNA: 3'- uUCG-CGCGCGuu----UAUCACGCC-CuGCU- -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 43882 | 0.66 | 0.896683 |
Target: 5'- cGAGCGCG-GCAAAgggGGcGCcGGaGACGAu -3' miRNA: 3'- -UUCGCGCgCGUUUa--UCaCG-CC-CUGCU- -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 115243 | 0.66 | 0.896683 |
Target: 5'- gAAGgGCGUGuCAAAUGGccUGCGGGGa-- -3' miRNA: 3'- -UUCgCGCGC-GUUUAUC--ACGCCCUgcu -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 22719 | 0.67 | 0.882299 |
Target: 5'- -uGCgGCGCGCAAgcGUgugucugcugcccGGUGCuGGGCGAa -3' miRNA: 3'- uuCG-CGCGCGUU--UA-------------UCACGcCCUGCU- -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 87528 | 0.67 | 0.875825 |
Target: 5'- uGGCGCGCgGCAGAUGcugcaGCGuGGGCGu -3' miRNA: 3'- uUCGCGCG-CGUUUAUca---CGC-CCUGCu -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 146008 | 0.67 | 0.860797 |
Target: 5'- cGGCGUGCGCGuuAUGG-GCucGGGCGAc -3' miRNA: 3'- uUCGCGCGCGUu-UAUCaCGc-CCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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