miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24374 5' -55.4 NC_005264.1 + 155266 0.7 0.74522
Target:  5'- cAGCG-GCGCgGGGUAGgcgGCGgGGACGAu -3'
miRNA:   3'- uUCGCgCGCG-UUUAUCa--CGC-CCUGCU- -5'
24374 5' -55.4 NC_005264.1 + 154928 0.7 0.74522
Target:  5'- -cGCGCGCGUugcuagccAGAgcGUGgGGGACGu -3'
miRNA:   3'- uuCGCGCGCG--------UUUauCACgCCCUGCu -5'
24374 5' -55.4 NC_005264.1 + 153381 0.7 0.704255
Target:  5'- gAAGCGuUGCGCGAggggaaaccgcuaAUGGUGCaGGACGu -3'
miRNA:   3'- -UUCGC-GCGCGUU-------------UAUCACGcCCUGCu -5'
24374 5' -55.4 NC_005264.1 + 146772 0.66 0.903168
Target:  5'- cAAGCGcCGCGCGgcGGUucucGGUGCGGcgguGugGAu -3'
miRNA:   3'- -UUCGC-GCGCGU--UUA----UCACGCC----CugCU- -5'
24374 5' -55.4 NC_005264.1 + 146008 0.67 0.860797
Target:  5'- cGGCGUGCGCGuuAUGG-GCucGGGCGAc -3'
miRNA:   3'- uUCGCGCGCGUu-UAUCaCGc-CCUGCU- -5'
24374 5' -55.4 NC_005264.1 + 145253 0.66 0.909415
Target:  5'- aAAGCGCGCGUAGAUgauuGGUauuGCuGGcACGGg -3'
miRNA:   3'- -UUCGCGCGCGUUUA----UCA---CGcCC-UGCU- -5'
24374 5' -55.4 NC_005264.1 + 143891 0.68 0.828259
Target:  5'- cGGCGgGCGCAAcgucgauUGUGGGACGu -3'
miRNA:   3'- uUCGCgCGCGUUuauc---ACGCCCUGCu -5'
24374 5' -55.4 NC_005264.1 + 136365 0.68 0.810864
Target:  5'- uGGGCGCugccgGCGCGAAUAGcgcUGUGGaGCGAu -3'
miRNA:   3'- -UUCGCG-----CGCGUUUAUC---ACGCCcUGCU- -5'
24374 5' -55.4 NC_005264.1 + 135570 0.66 0.90253
Target:  5'- gAAGcCGCGCGUcgcucgcgacuacGGGUGG-GuCGGGACGGu -3'
miRNA:   3'- -UUC-GCGCGCG-------------UUUAUCaC-GCCCUGCU- -5'
24374 5' -55.4 NC_005264.1 + 128595 0.75 0.435131
Target:  5'- --cCGCGCGCAcg-AG-GCGGGACGAa -3'
miRNA:   3'- uucGCGCGCGUuuaUCaCGCCCUGCU- -5'
24374 5' -55.4 NC_005264.1 + 128376 1.07 0.004127
Target:  5'- gAAGCGCGCGCAAAUAGUGCGGGACGAg -3'
miRNA:   3'- -UUCGCGCGCGUUUAUCACGCCCUGCU- -5'
24374 5' -55.4 NC_005264.1 + 121913 0.66 0.926697
Target:  5'- gGGGCGCgGCGCGGcgGGgaggGCGacGGCGAg -3'
miRNA:   3'- -UUCGCG-CGCGUUuaUCa---CGCc-CUGCU- -5'
24374 5' -55.4 NC_005264.1 + 121639 0.68 0.819648
Target:  5'- aAGGCGCGaGcCGAGcAG-GCGGGGCGGa -3'
miRNA:   3'- -UUCGCGCgC-GUUUaUCaCGCCCUGCU- -5'
24374 5' -55.4 NC_005264.1 + 120487 0.73 0.581624
Target:  5'- cGGUGCGCG-GAGUAGgugGCGgGGGCGAg -3'
miRNA:   3'- uUCGCGCGCgUUUAUCa--CGC-CCUGCU- -5'
24374 5' -55.4 NC_005264.1 + 115243 0.66 0.896683
Target:  5'- gAAGgGCGUGuCAAAUGGccUGCGGGGa-- -3'
miRNA:   3'- -UUCgCGCGC-GUUUAUC--ACGCCCUgcu -5'
24374 5' -55.4 NC_005264.1 + 109824 0.66 0.903168
Target:  5'- -cGUGCGUGCAGGU--UGCGGaGGCa- -3'
miRNA:   3'- uuCGCGCGCGUUUAucACGCC-CUGcu -5'
24374 5' -55.4 NC_005264.1 + 106719 0.69 0.799196
Target:  5'- --uCGCGCGCcuaguggucgacaaGGAUGGUGCGGGG-GAg -3'
miRNA:   3'- uucGCGCGCG--------------UUUAUCACGCCCUgCU- -5'
24374 5' -55.4 NC_005264.1 + 100935 0.66 0.915419
Target:  5'- uAGCGCGCGCcguGAUAGacgGCaGGAUu- -3'
miRNA:   3'- uUCGCGCGCGu--UUAUCa--CGcCCUGcu -5'
24374 5' -55.4 NC_005264.1 + 96533 0.66 0.915419
Target:  5'- -cGC-CGCGCAAcaggAGUGCaGGGACc- -3'
miRNA:   3'- uuCGcGCGCGUUua--UCACG-CCCUGcu -5'
24374 5' -55.4 NC_005264.1 + 95467 0.7 0.754977
Target:  5'- cGGCGgGCGCAGcgAGcGCGGG-CGc -3'
miRNA:   3'- uUCGCgCGCGUUuaUCaCGCCCuGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.