Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24375 | 3' | -55.6 | NC_005264.1 | + | 159670 | 0.69 | 0.818788 |
Target: 5'- gCGCCGUCG-C-GCGCGGA--GGGUCg -3' miRNA: 3'- -GCGGUAGCaGcCGCGCUUugUCCAGa -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 158987 | 0.67 | 0.880482 |
Target: 5'- aGCCcaAUCccCGGCGCaggacccaugccaGGAGCAGGUCUc -3' miRNA: 3'- gCGG--UAGcaGCCGCG-------------CUUUGUCCAGA- -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 158111 | 0.66 | 0.929808 |
Target: 5'- aCGCCGgc-UCGGCGgGcAGCGGcGUCUg -3' miRNA: 3'- -GCGGUagcAGCCGCgCuUUGUC-CAGA- -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 157638 | 0.7 | 0.745803 |
Target: 5'- uCGCC-UCGccgCGGCGCGAgacacGACAGGa-- -3' miRNA: 3'- -GCGGuAGCa--GCCGCGCU-----UUGUCCaga -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 153119 | 0.72 | 0.647304 |
Target: 5'- uGCCGcggCGggcacaauggcucagCGGCGCGAAACAGcGUCg -3' miRNA: 3'- gCGGUa--GCa--------------GCCGCGCUUUGUC-CAGa -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 151890 | 0.66 | 0.919044 |
Target: 5'- uCGUCAUCGUCGGUcccGCGGu---GGUUg -3' miRNA: 3'- -GCGGUAGCAGCCG---CGCUuuguCCAGa -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 149871 | 0.68 | 0.843634 |
Target: 5'- gCGUCGUCGUCGGCgGCGgcGCGccgcccGGUa- -3' miRNA: 3'- -GCGGUAGCAGCCG-CGCuuUGU------CCAga -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 148424 | 0.66 | 0.939632 |
Target: 5'- cCGCCAUaCG--GGCGUGGGACGGaGUUa -3' miRNA: 3'- -GCGGUA-GCagCCGCGCUUUGUC-CAGa -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 145931 | 0.68 | 0.866779 |
Target: 5'- cCGCCAUCGUC--CGCGGccGACGGGa-- -3' miRNA: 3'- -GCGGUAGCAGccGCGCU--UUGUCCaga -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 144991 | 0.66 | 0.939632 |
Target: 5'- aCGCgGUCGaacagCGcGCGCGAGAUggAGGaUCUa -3' miRNA: 3'- -GCGgUAGCa----GC-CGCGCUUUG--UCC-AGA- -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 132241 | 0.68 | 0.859264 |
Target: 5'- cCGCCGUCGcCGG-GCugcuucucccgaGAAGCAGGUg- -3' miRNA: 3'- -GCGGUAGCaGCCgCG------------CUUUGUCCAga -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 130542 | 0.69 | 0.818788 |
Target: 5'- gCGCgaagCGUCG-CGGCGCGugugcuacgcGCAGGUCUc -3' miRNA: 3'- -GCG----GUAGCaGCCGCGCuu--------UGUCCAGA- -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 127849 | 0.66 | 0.934838 |
Target: 5'- gGCCggCGgucuagaaccCGGCGCGcgAAugGGGUCUc -3' miRNA: 3'- gCGGuaGCa---------GCCGCGC--UUugUCCAGA- -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 127183 | 0.69 | 0.818788 |
Target: 5'- aCGaCCAUCGU--GCGCGAAgcGCAGGUa- -3' miRNA: 3'- -GC-GGUAGCAgcCGCGCUU--UGUCCAga -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 127165 | 0.7 | 0.755363 |
Target: 5'- aCGCCGagGUCGGgucugagaaCGCGAA-UAGGUCUu -3' miRNA: 3'- -GCGGUagCAGCC---------GCGCUUuGUCCAGA- -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 126889 | 1.07 | 0.004898 |
Target: 5'- uCGCCAUCGUCGGCGCGAAACAGGUCUc -3' miRNA: 3'- -GCGGUAGCAGCCGCGCUUUGUCCAGA- -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 126104 | 0.66 | 0.934838 |
Target: 5'- gCGCCGUCGcgCuGCGgGGAACugAGGUUUc -3' miRNA: 3'- -GCGGUAGCa-GcCGCgCUUUG--UCCAGA- -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 125521 | 0.68 | 0.866779 |
Target: 5'- gGCCAUCGagGGC-CGGuAGCcGGUCUu -3' miRNA: 3'- gCGGUAGCagCCGcGCU-UUGuCCAGA- -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 122706 | 0.71 | 0.726399 |
Target: 5'- gGCCGUC-UCGGCgGCGAGACgAGGa-- -3' miRNA: 3'- gCGGUAGcAGCCG-CGCUUUG-UCCaga -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 122516 | 0.68 | 0.843634 |
Target: 5'- cCGCCGcaCG-CGGCGgGggGCAGGg-- -3' miRNA: 3'- -GCGGUa-GCaGCCGCgCuuUGUCCaga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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