miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24375 3' -55.6 NC_005264.1 + 121967 0.66 0.944194
Target:  5'- uGCUGUUGUUuaGCGCGcAAGCGGGUUUc -3'
miRNA:   3'- gCGGUAGCAGc-CGCGC-UUUGUCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 3489 0.68 0.843634
Target:  5'- cCGCCGcaCG-CGGCGgGggGCAGGg-- -3'
miRNA:   3'- -GCGGUa-GCaGCCGCgCuuUGUCCaga -5'
24375 3' -55.6 NC_005264.1 + 96351 0.69 0.835531
Target:  5'- gCGCCAUCGcCGGCaCGGGACucaaaAGGaUCa -3'
miRNA:   3'- -GCGGUAGCaGCCGcGCUUUG-----UCC-AGa -5'
24375 3' -55.6 NC_005264.1 + 126889 1.07 0.004898
Target:  5'- uCGCCAUCGUCGGCGCGAAACAGGUCUc -3'
miRNA:   3'- -GCGGUAGCAGCCGCGCUUUGUCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 113365 0.66 0.929808
Target:  5'- uGcCCGUCGaauaCGGCGCGGGucaGGGUUa -3'
miRNA:   3'- gC-GGUAGCa---GCCGCGCUUug-UCCAGa -5'
24375 3' -55.6 NC_005264.1 + 39084 0.66 0.929808
Target:  5'- aCGCCGgc-UCGGCGgGcAGCGGcGUCUg -3'
miRNA:   3'- -GCGGUagcAGCCGCgCuUUGUC-CAGA- -5'
24375 3' -55.6 NC_005264.1 + 32864 0.66 0.919044
Target:  5'- uCGUCAUCGUCGGUcccGCGGu---GGUUg -3'
miRNA:   3'- -GCGGUAGCAGCCG---CGCUuuguCCAGa -5'
24375 3' -55.6 NC_005264.1 + 18302 0.67 0.901141
Target:  5'- -uCCGUCGUCGuuGCGCGAGGCcguccGUCUa -3'
miRNA:   3'- gcGGUAGCAGC--CGCGCUUUGuc---CAGA- -5'
24375 3' -55.6 NC_005264.1 + 69072 0.67 0.881182
Target:  5'- gGUCAUCGUCGuCGCGcaccGCAaGGUCa -3'
miRNA:   3'- gCGGUAGCAGCcGCGCuu--UGU-CCAGa -5'
24375 3' -55.6 NC_005264.1 + 13214 0.68 0.859264
Target:  5'- cCGCCGUCGcCGG-GCugcuucucccgaGAAGCAGGUg- -3'
miRNA:   3'- -GCGGUAGCaGCCgCG------------CUUUGUCCAga -5'
24375 3' -55.6 NC_005264.1 + 74636 0.68 0.874087
Target:  5'- gCGCUAcCGUCaGCGCGAAcccaggguGCAGGcCg -3'
miRNA:   3'- -GCGGUaGCAGcCGCGCUU--------UGUCCaGa -5'
24375 3' -55.6 NC_005264.1 + 75399 0.67 0.901141
Target:  5'- gCGCCAcCGUCuGCGCGGccGCGGG-Ca -3'
miRNA:   3'- -GCGGUaGCAGcCGCGCUu-UGUCCaGa -5'
24375 3' -55.6 NC_005264.1 + 111725 0.66 0.939632
Target:  5'- cCGCCAgCGUCgaGGCGCG-AGCAGa--- -3'
miRNA:   3'- -GCGGUaGCAG--CCGCGCuUUGUCcaga -5'
24375 3' -55.6 NC_005264.1 + 145931 0.68 0.866779
Target:  5'- cCGCCAUCGUC--CGCGGccGACGGGa-- -3'
miRNA:   3'- -GCGGUAGCAGccGCGCU--UUGUCCaga -5'
24375 3' -55.6 NC_005264.1 + 7077 0.66 0.934838
Target:  5'- gCGCCGUCGcgCuGCGgGGAACugAGGUUUc -3'
miRNA:   3'- -GCGGUAGCa-GcCGCgCUUUG--UCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 18161 0.67 0.901141
Target:  5'- uGUCGUCGUCGGCGCcacugucGugGGGg-- -3'
miRNA:   3'- gCGGUAGCAGCCGCGcu-----UugUCCaga -5'
24375 3' -55.6 NC_005264.1 + 6494 0.68 0.866779
Target:  5'- gGCCAUCGagGGC-CGGuAGCcGGUCUu -3'
miRNA:   3'- gCGGUAGCagCCGcGCU-UUGuCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 30845 0.68 0.843634
Target:  5'- gCGUCGUCGUCGGCgGCGgcGCGccgcccGGUa- -3'
miRNA:   3'- -GCGGUAGCAGCCG-CGCuuUGU------CCAga -5'
24375 3' -55.6 NC_005264.1 + 127849 0.66 0.934838
Target:  5'- gGCCggCGgucuagaaccCGGCGCGcgAAugGGGUCUc -3'
miRNA:   3'- gCGGuaGCa---------GCCGCGC--UUugUCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 22230 0.66 0.929808
Target:  5'- uCGCC-UCGUCGGCGgucuGGGC-GGUCg -3'
miRNA:   3'- -GCGGuAGCAGCCGCgc--UUUGuCCAGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.