miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24376 5' -53.6 NC_005264.1 + 162475 0.66 0.968184
Target:  5'- cCGC-CAGAGaGggGGgaaguCGGGCAACGg -3'
miRNA:   3'- aGCGaGUCUCaUaaCC-----GCCCGUUGCg -5'
24376 5' -53.6 NC_005264.1 + 160888 0.76 0.538964
Target:  5'- -aGCUCGGGGg---GGgGGGCAACGg -3'
miRNA:   3'- agCGAGUCUCauaaCCgCCCGUUGCg -5'
24376 5' -53.6 NC_005264.1 + 157334 0.68 0.908392
Target:  5'- aCGCcuucgCGGAGgccgacgaggGUUGGCGGGCccuggccguGAUGCu -3'
miRNA:   3'- aGCGa----GUCUCa---------UAACCGCCCG---------UUGCG- -5'
24376 5' -53.6 NC_005264.1 + 155736 0.66 0.968184
Target:  5'- gCGCggGGGGUuaUGGUGGGC--CGCc -3'
miRNA:   3'- aGCGagUCUCAuaACCGCCCGuuGCG- -5'
24376 5' -53.6 NC_005264.1 + 153638 0.67 0.949947
Target:  5'- uUUGUUCGGGGUG-UGG-GGGCGugucuGCGUc -3'
miRNA:   3'- -AGCGAGUCUCAUaACCgCCCGU-----UGCG- -5'
24376 5' -53.6 NC_005264.1 + 153556 0.7 0.851593
Target:  5'- aUGCgguuGGGcGUUGGCGGGguACGUg -3'
miRNA:   3'- aGCGagu-CUCaUAACCGCCCguUGCG- -5'
24376 5' -53.6 NC_005264.1 + 153282 0.67 0.954053
Target:  5'- -gGCUUcu-GUAgcgagGcGCGGGCGACGCg -3'
miRNA:   3'- agCGAGucuCAUaa---C-CGCCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 150982 0.69 0.895571
Target:  5'- -aGCUCGcGAGUGgcGGCgacGGGCcGCGUg -3'
miRNA:   3'- agCGAGU-CUCAUaaCCG---CCCGuUGCG- -5'
24376 5' -53.6 NC_005264.1 + 150606 0.69 0.867888
Target:  5'- gCGC-CAGAGgugGggcgagucugcucucUGGCGaGGCGGCGCg -3'
miRNA:   3'- aGCGaGUCUCa--Ua--------------ACCGC-CCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 143215 0.75 0.610589
Target:  5'- aCGCUCAGAGggaauUGUUGGCGaGG--GCGCc -3'
miRNA:   3'- aGCGAGUCUC-----AUAACCGC-CCguUGCG- -5'
24376 5' -53.6 NC_005264.1 + 141935 0.7 0.835236
Target:  5'- aUGUUCAGAGgagcgGGUGGGCGguACGa -3'
miRNA:   3'- aGCGAGUCUCauaa-CCGCCCGU--UGCg -5'
24376 5' -53.6 NC_005264.1 + 139731 0.7 0.834398
Target:  5'- cUCGCUCGuuGGGa---GGCGGGCGgcagacaACGCg -3'
miRNA:   3'- -AGCGAGU--CUCauaaCCGCCCGU-------UGCG- -5'
24376 5' -53.6 NC_005264.1 + 136465 0.67 0.94737
Target:  5'- gCGCUCAGAGac--GGCGccgcgcagccugccGCGGCGCa -3'
miRNA:   3'- aGCGAGUCUCauaaCCGCc-------------CGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 133879 0.79 0.38937
Target:  5'- gCGCUCAGAGUcUUGGCGuucacccacGGCucguACGCg -3'
miRNA:   3'- aGCGAGUCUCAuAACCGC---------CCGu---UGCG- -5'
24376 5' -53.6 NC_005264.1 + 126935 0.73 0.672694
Target:  5'- cUCGC-CGGAGUAcUGGgGGGacgUAACGCu -3'
miRNA:   3'- -AGCGaGUCUCAUaACCgCCC---GUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 126819 1.11 0.003553
Target:  5'- cUCGCUCAGAGUAUUGGCGGGCAACGCc -3'
miRNA:   3'- -AGCGAGUCUCAUAACCGCCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 125839 0.68 0.908392
Target:  5'- aCGgUCAGGGUGUUGcCGGagGCGGCGg -3'
miRNA:   3'- aGCgAGUCUCAUAACcGCC--CGUUGCg -5'
24376 5' -53.6 NC_005264.1 + 124706 0.69 0.874581
Target:  5'- gCGUUCccacGAGUAcagagcGcGCGGGCAACGCc -3'
miRNA:   3'- aGCGAGu---CUCAUaa----C-CGCCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 123607 0.7 0.851593
Target:  5'- aCGUUCGGccGGUAUUGGUGuucaaguauccGGCAGcCGCa -3'
miRNA:   3'- aGCGAGUC--UCAUAACCGC-----------CCGUU-GCG- -5'
24376 5' -53.6 NC_005264.1 + 123039 0.8 0.356403
Target:  5'- cUCGCccacCAGGGgcUUGGCGGGcCGAUGCa -3'
miRNA:   3'- -AGCGa---GUCUCauAACCGCCC-GUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.