Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24376 | 5' | -53.6 | NC_005264.1 | + | 110364 | 0.66 | 0.968492 |
Target: 5'- -aGUUCgaGGAGUAUgcuaauaccgccgacGGCGGGCGcAUGCu -3' miRNA: 3'- agCGAG--UCUCAUAa--------------CCGCCCGU-UGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 81800 | 0.68 | 0.908392 |
Target: 5'- gCGCcagUgAGGGUAgacGGCGGGUAgGCGCc -3' miRNA: 3'- aGCG---AgUCUCAUaa-CCGCCCGU-UGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 59736 | 0.69 | 0.902101 |
Target: 5'- cUCGUUagaAGAGUcauggGGCGGcggcuGCGACGCg -3' miRNA: 3'- -AGCGAg--UCUCAuaa--CCGCC-----CGUUGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 126819 | 1.11 | 0.003553 |
Target: 5'- cUCGCUCAGAGUAUUGGCGGGCAACGCc -3' miRNA: 3'- -AGCGAGUCUCAUAACCGCCCGUUGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 89445 | 0.66 | 0.964985 |
Target: 5'- cUUGgUCAGcgGGUGUUGGCuuGGCAgagccGCGCc -3' miRNA: 3'- -AGCgAGUC--UCAUAACCGc-CCGU-----UGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 119289 | 0.66 | 0.961567 |
Target: 5'- gUUGCUCGcGGU---GGCuGGGCAGCuGCa -3' miRNA: 3'- -AGCGAGUcUCAuaaCCG-CCCGUUG-CG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 23308 | 0.67 | 0.954053 |
Target: 5'- aUCGC-CAcGAGUGc-GGCGGGCcacaacauCGCg -3' miRNA: 3'- -AGCGaGU-CUCAUaaCCGCCCGuu------GCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 71363 | 0.67 | 0.954053 |
Target: 5'- -aGC-CGGAGgccaGGUGGGCAACa- -3' miRNA: 3'- agCGaGUCUCauaaCCGCCCGUUGcg -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 110255 | 0.67 | 0.949947 |
Target: 5'- aUGCUUAccGAGgacuacUGGCGGGCGauACGUu -3' miRNA: 3'- aGCGAGU--CUCaua---ACCGCCCGU--UGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 38307 | 0.68 | 0.908392 |
Target: 5'- aCGCcuucgCGGAGgccgacgaggGUUGGCGGGCccuggccguGAUGCu -3' miRNA: 3'- aGCGa----GUCUCa---------UAACCGCCCG---------UUGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 103752 | 0.67 | 0.94102 |
Target: 5'- aUGCUUAG-GUucaugcugaGGCGGGCGGcCGCu -3' miRNA: 3'- aGCGAGUCuCAuaa------CCGCCCGUU-GCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 91495 | 0.67 | 0.953653 |
Target: 5'- cCGCUgCGGGGUuucGGCGGcGUAgaaugccGCGCa -3' miRNA: 3'- aGCGA-GUCUCAuaaCCGCC-CGU-------UGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 43448 | 0.66 | 0.968184 |
Target: 5'- cCGC-CAGAGaGggGGgaaguCGGGCAACGg -3' miRNA: 3'- aGCGaGUCUCaUaaCC-----GCCCGUUGCg -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 48709 | 0.68 | 0.920247 |
Target: 5'- gUCGCUCgcgGGAGaugaGGCGgccGGCGAUGCu -3' miRNA: 3'- -AGCGAG---UCUCauaaCCGC---CCGUUGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 155736 | 0.66 | 0.968184 |
Target: 5'- gCGCggGGGGUuaUGGUGGGC--CGCc -3' miRNA: 3'- aGCGagUCUCAuaACCGCCCGuuGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 34255 | 0.67 | 0.954053 |
Target: 5'- -gGCUUcu-GUAgcgagGcGCGGGCGACGCg -3' miRNA: 3'- agCGAGucuCAUaa---C-CGCCCGUUGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 2655 | 0.68 | 0.920247 |
Target: 5'- cUCGuCUaCAGAGUccucUGGCcccgaccgcgaGGGCAGCGUg -3' miRNA: 3'- -AGC-GA-GUCUCAua--ACCG-----------CCCGUUGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 6813 | 0.68 | 0.908392 |
Target: 5'- aCGgUCAGGGUGUUGcCGGagGCGGCGg -3' miRNA: 3'- aGCgAGUCUCAUAACcGCC--CGUUGCg -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 74075 | 0.66 | 0.966931 |
Target: 5'- aCGCggcaucCGGAGUAguguggucguacaUGGCGcGGuCGACGCu -3' miRNA: 3'- aGCGa-----GUCUCAUa------------ACCGC-CC-GUUGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 20524 | 0.66 | 0.957548 |
Target: 5'- aCGuCUCu--GUGUccGGCGGGCAcgaagaaGCGCg -3' miRNA: 3'- aGC-GAGucuCAUAa-CCGCCCGU-------UGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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