miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24377 3' -53.8 NC_005264.1 + 103507 0.65 0.976586
Target:  5'- cGCgaCAGGcuguucauguacauGGACGUGUCGAGCGCUa-- -3'
miRNA:   3'- -CGg-GUCU--------------UUUGCGCAGCUCGUGGagc -5'
24377 3' -53.8 NC_005264.1 + 90934 0.65 0.976586
Target:  5'- cGCCaugaAGAAcaGGCaaaacacgguguuuGCGUCGGGCGCCcgCGu -3'
miRNA:   3'- -CGGg---UCUU--UUG--------------CGCAGCUCGUGGa-GC- -5'
24377 3' -53.8 NC_005264.1 + 143854 0.66 0.975842
Target:  5'- cGCCCAuGAAGGCGCacgaagacucuauaaGUCG-GCGCggCGg -3'
miRNA:   3'- -CGGGU-CUUUUGCG---------------CAGCuCGUGgaGC- -5'
24377 3' -53.8 NC_005264.1 + 62458 0.66 0.975842
Target:  5'- gGCCCuAGAAcaagaaucgguguuGCGCGUCGuGCGcgcguCCUCu -3'
miRNA:   3'- -CGGG-UCUUu-------------UGCGCAGCuCGU-----GGAGc -5'
24377 3' -53.8 NC_005264.1 + 61987 0.66 0.974824
Target:  5'- cGCCUGGucccAUGCGUCGAGgGagaaCUCGc -3'
miRNA:   3'- -CGGGUCuuu-UGCGCAGCUCgUg---GAGC- -5'
24377 3' -53.8 NC_005264.1 + 13434 0.66 0.974824
Target:  5'- gGCCCAGucuACGCG-CGAGCGg---- -3'
miRNA:   3'- -CGGGUCuuuUGCGCaGCUCGUggagc -5'
24377 3' -53.8 NC_005264.1 + 5021 0.66 0.974564
Target:  5'- uGCgCAGAGGAggccacgagguucCGCGUCGugGGCGCCg-- -3'
miRNA:   3'- -CGgGUCUUUU-------------GCGCAGC--UCGUGGagc -5'
24377 3' -53.8 NC_005264.1 + 146520 0.66 0.97404
Target:  5'- uUCCAGAGcuACGCGUCGAgaguGCggcgcacauccccaGCCUCu -3'
miRNA:   3'- cGGGUCUUu-UGCGCAGCU----CG--------------UGGAGc -5'
24377 3' -53.8 NC_005264.1 + 104210 0.66 0.972142
Target:  5'- cGCCgCAGAGcACGCGUCGcacGGguCaUCGg -3'
miRNA:   3'- -CGG-GUCUUuUGCGCAGC---UCguGgAGC- -5'
24377 3' -53.8 NC_005264.1 + 65118 0.66 0.972142
Target:  5'- cUCCGGuGAACGCGaCGccaAGC-CCUCGg -3'
miRNA:   3'- cGGGUCuUUUGCGCaGC---UCGuGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 36163 0.66 0.972142
Target:  5'- aGCUCGGGAAGCGCGaCGGGacgaUCGc -3'
miRNA:   3'- -CGGGUCUUUUGCGCaGCUCguggAGC- -5'
24377 3' -53.8 NC_005264.1 + 30089 0.66 0.970437
Target:  5'- cGCCCGGAcagaaucgcgagucgAGAUGCGggcggCGcGGCACCgagcugCGg -3'
miRNA:   3'- -CGGGUCU---------------UUUGCGCa----GC-UCGUGGa-----GC- -5'
24377 3' -53.8 NC_005264.1 + 100727 0.66 0.96926
Target:  5'- gGCUCuggAGAGGGCGCugGUCGAGCucGCCgaggCGu -3'
miRNA:   3'- -CGGG---UCUUUUGCG--CAGCUCG--UGGa---GC- -5'
24377 3' -53.8 NC_005264.1 + 150605 0.66 0.96926
Target:  5'- gGCgCCAGAGGugGgG-CGAGuCugCUCu -3'
miRNA:   3'- -CG-GGUCUUUugCgCaGCUC-GugGAGc -5'
24377 3' -53.8 NC_005264.1 + 31578 0.66 0.96926
Target:  5'- gGCgCCAGAGGugGgG-CGAGuCugCUCu -3'
miRNA:   3'- -CG-GGUCUUUugCgCaGCUC-GugGAGc -5'
24377 3' -53.8 NC_005264.1 + 59001 0.66 0.966171
Target:  5'- gGCCCAGAAGcuugGCGCucagcgaaUCGAGCGCa--- -3'
miRNA:   3'- -CGGGUCUUU----UGCGc-------AGCUCGUGgagc -5'
24377 3' -53.8 NC_005264.1 + 101439 0.66 0.966171
Target:  5'- aCCCGGAAGcgGCGaagGAGCGCCUgGa -3'
miRNA:   3'- cGGGUCUUUugCGCag-CUCGUGGAgC- -5'
24377 3' -53.8 NC_005264.1 + 83132 0.66 0.966171
Target:  5'- gGCCgCGG-AGGCGCGUCu-GC-CCUCa -3'
miRNA:   3'- -CGG-GUCuUUUGCGCAGcuCGuGGAGc -5'
24377 3' -53.8 NC_005264.1 + 94342 0.66 0.966171
Target:  5'- cCCCAGAAAGC-CGUCGccGCguucgaucuaaACCUCa -3'
miRNA:   3'- cGGGUCUUUUGcGCAGCu-CG-----------UGGAGc -5'
24377 3' -53.8 NC_005264.1 + 153137 0.66 0.96287
Target:  5'- gGCUCAGcggcgcGAAACaGCGUCGAGgcgcgagccCGCCUCc -3'
miRNA:   3'- -CGGGUC------UUUUG-CGCAGCUC---------GUGGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.