Results 1 - 20 of 94 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 126626 | 1.12 | 0.003455 |
Target: 5'- aGCCCAGAAAACGCGUCGAGCACCUCGg -3' miRNA: 3'- -CGGGUCUUUUGCGCAGCUCGUGGAGC- -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 128559 | 0.76 | 0.538262 |
Target: 5'- gGCCCucGAAcuuacucuucGACGCGUCGcccGCGCCUCGc -3' miRNA: 3'- -CGGGu-CUU----------UUGCGCAGCu--CGUGGAGC- -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 9532 | 0.76 | 0.538262 |
Target: 5'- gGCCCucGAAcuuacucuucGACGCGUCGcccGCGCCUCGc -3' miRNA: 3'- -CGGGu-CUU----------UUGCGCAGCu--CGUGGAGC- -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 114452 | 0.76 | 0.548241 |
Target: 5'- cGCCUcGAcGAa-CGUCGAGCGCCUCGa -3' miRNA: 3'- -CGGGuCUuUUgcGCAGCUCGUGGAGC- -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 97937 | 0.74 | 0.650094 |
Target: 5'- aGUCCAGAGcuuCGCGUCGAGguCAUCUCc -3' miRNA: 3'- -CGGGUCUUuu-GCGCAGCUC--GUGGAGc -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 51679 | 0.74 | 0.660329 |
Target: 5'- aCCCGGugguAACGCaGUUGAGCAUCUCc -3' miRNA: 3'- cGGGUCuu--UUGCG-CAGCUCGUGGAGc -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 12888 | 0.73 | 0.690863 |
Target: 5'- aCCCGGAcGGAC-CGUCGAGCcgcccgGCCUCGc -3' miRNA: 3'- cGGGUCU-UUUGcGCAGCUCG------UGGAGC- -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 152529 | 0.73 | 0.720954 |
Target: 5'- uGCUCAGu--GCGCGUCGcuGCGCC-CGg -3' miRNA: 3'- -CGGGUCuuuUGCGCAGCu-CGUGGaGC- -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 131914 | 0.73 | 0.690863 |
Target: 5'- aCCCGGAcGGAC-CGUCGAGCcgcccgGCCUCGc -3' miRNA: 3'- cGGGUCU-UUUGcGCAGCUCG------UGGAGC- -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 114692 | 0.73 | 0.690863 |
Target: 5'- cGCCgagcaGGAuuGCGCGgucUCGuGCGCCUCGa -3' miRNA: 3'- -CGGg----UCUuuUGCGC---AGCuCGUGGAGC- -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 33502 | 0.73 | 0.720954 |
Target: 5'- uGCUCAGu--GCGCGUCGcuGCGCC-CGg -3' miRNA: 3'- -CGGGUCuuuUGCGCAGCu-CGUGGaGC- -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 153814 | 0.72 | 0.759005 |
Target: 5'- -gCCAGGcgcGAACGCGUCGGGacuaacggcggcuCGCCUCa -3' miRNA: 3'- cgGGUCU---UUUGCGCAGCUC-------------GUGGAGc -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 113195 | 0.72 | 0.759961 |
Target: 5'- aCCCGacGucCGgGUCGAGCACCUUGg -3' miRNA: 3'- cGGGUcuUuuGCgCAGCUCGUGGAGC- -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 88086 | 0.72 | 0.740648 |
Target: 5'- cGCCaagCAGu--GCGCGUCGGGCACagcgUCGg -3' miRNA: 3'- -CGG---GUCuuuUGCGCAGCUCGUGg---AGC- -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 13339 | 0.72 | 0.759961 |
Target: 5'- aGCCgaaGGGAAcgGCGCGaaUCGAGCGgCUCGa -3' miRNA: 3'- -CGGg--UCUUU--UGCGC--AGCUCGUgGAGC- -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 96280 | 0.72 | 0.740648 |
Target: 5'- cUCCAucguAGACGCGcUCGuGCGCCUCGg -3' miRNA: 3'- cGGGUcu--UUUGCGC-AGCuCGUGGAGC- -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 35783 | 0.71 | 0.806982 |
Target: 5'- --gCGGAGGGCGCGguggcgccgucguggCGGGCGCCUCu -3' miRNA: 3'- cggGUCUUUUGCGCa--------------GCUCGUGGAGc -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 153296 | 0.71 | 0.826903 |
Target: 5'- gGCgCGGgcGACGCGUCGAagaguaaguucgaggGCcCCUCGa -3' miRNA: 3'- -CGgGUCuuUUGCGCAGCU---------------CGuGGAGC- -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 162570 | 0.71 | 0.823503 |
Target: 5'- uGCCCAGAuguCGgguucuggaUGUCGAGCggcccGCCUCGc -3' miRNA: 3'- -CGGGUCUuuuGC---------GCAGCUCG-----UGGAGC- -5' |
|||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 157036 | 0.71 | 0.788055 |
Target: 5'- -gCCGGAcuauuGAACGCcgUGGGCGCCUCGg -3' miRNA: 3'- cgGGUCU-----UUUGCGcaGCUCGUGGAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home