miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24377 3' -53.8 NC_005264.1 + 90934 0.65 0.976586
Target:  5'- cGCCaugaAGAAcaGGCaaaacacgguguuuGCGUCGGGCGCCcgCGu -3'
miRNA:   3'- -CGGg---UCUU--UUG--------------CGCAGCUCGUGGa-GC- -5'
24377 3' -53.8 NC_005264.1 + 41020 0.67 0.947441
Target:  5'- uCCCAGgcAGCG-GUCGAGgGCCg-- -3'
miRNA:   3'- cGGGUCuuUUGCgCAGCUCgUGGagc -5'
24377 3' -53.8 NC_005264.1 + 117713 0.68 0.938336
Target:  5'- cCCCGGAuacuAGCGUGcCGAGCACa--- -3'
miRNA:   3'- cGGGUCUu---UUGCGCaGCUCGUGgagc -5'
24377 3' -53.8 NC_005264.1 + 126626 1.12 0.003455
Target:  5'- aGCCCAGAAAACGCGUCGAGCACCUCGg -3'
miRNA:   3'- -CGGGUCUUUUGCGCAGCUCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 94342 0.66 0.966171
Target:  5'- cCCCAGAAAGC-CGUCGccGCguucgaucuaaACCUCa -3'
miRNA:   3'- cGGGUCUUUUGcGCAGCu-CG-----------UGGAGc -5'
24377 3' -53.8 NC_005264.1 + 83132 0.66 0.966171
Target:  5'- gGCCgCGG-AGGCGCGUCu-GC-CCUCa -3'
miRNA:   3'- -CGG-GUCuUUUGCGCAGcuCGuGGAGc -5'
24377 3' -53.8 NC_005264.1 + 8379 0.66 0.96287
Target:  5'- gGCgCCGGAcgcGGCGCGUUGAaGCugC-CGg -3'
miRNA:   3'- -CG-GGUCUu--UUGCGCAGCU-CGugGaGC- -5'
24377 3' -53.8 NC_005264.1 + 39359 0.67 0.959351
Target:  5'- cGCCCAGAAu-CGCGcagccaGAG-GCCUCa -3'
miRNA:   3'- -CGGGUCUUuuGCGCag----CUCgUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 146204 0.67 0.95561
Target:  5'- cGCaCCAGAGacgcacucGACGUGUCGAuCGCCg-- -3'
miRNA:   3'- -CG-GGUCUU--------UUGCGCAGCUcGUGGagc -5'
24377 3' -53.8 NC_005264.1 + 101034 0.67 0.947441
Target:  5'- uGCCCGGc-GAUGCccgcggcccgGUgGAGCugCUCGa -3'
miRNA:   3'- -CGGGUCuuUUGCG----------CAgCUCGugGAGC- -5'
24377 3' -53.8 NC_005264.1 + 119968 0.67 0.951641
Target:  5'- cCCCGGAcGACGUGUUGAGaCACa--- -3'
miRNA:   3'- cGGGUCUuUUGCGCAGCUC-GUGgagc -5'
24377 3' -53.8 NC_005264.1 + 116403 0.67 0.957133
Target:  5'- aGCCgCAGGc--CGaCGUCGAGCgcagggcggcgugcaGCCUCGc -3'
miRNA:   3'- -CGG-GUCUuuuGC-GCAGCUCG---------------UGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 100727 0.66 0.96926
Target:  5'- gGCUCuggAGAGGGCGCugGUCGAGCucGCCgaggCGu -3'
miRNA:   3'- -CGGG---UCUUUUGCG--CAGCUCG--UGGa---GC- -5'
24377 3' -53.8 NC_005264.1 + 121251 0.67 0.951641
Target:  5'- gGCCCAuGuuuAGACGCcacGUCGAGCGgUUCc -3'
miRNA:   3'- -CGGGU-Cu--UUUGCG---CAGCUCGUgGAGc -5'
24377 3' -53.8 NC_005264.1 + 31578 0.66 0.96926
Target:  5'- gGCgCCAGAGGugGgG-CGAGuCugCUCu -3'
miRNA:   3'- -CG-GGUCUUUugCgCaGCUC-GugGAGc -5'
24377 3' -53.8 NC_005264.1 + 7470 0.67 0.959351
Target:  5'- cGUCCGGAGAACGU--CGuGCgGCCUCc -3'
miRNA:   3'- -CGGGUCUUUUGCGcaGCuCG-UGGAGc -5'
24377 3' -53.8 NC_005264.1 + 82362 0.67 0.951641
Target:  5'- -gCCAGGcAGGCGCGUCGAuccgGUGCCgggCGc -3'
miRNA:   3'- cgGGUCU-UUUGCGCAGCU----CGUGGa--GC- -5'
24377 3' -53.8 NC_005264.1 + 9676 0.67 0.943007
Target:  5'- gGCCUuggGGGAGGCGgG-CucGCGCCUCGa -3'
miRNA:   3'- -CGGG---UCUUUUGCgCaGcuCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 101439 0.66 0.966171
Target:  5'- aCCCGGAAGcgGCGaagGAGCGCCUgGa -3'
miRNA:   3'- cGGGUCUUUugCGCag-CUCGUGGAgC- -5'
24377 3' -53.8 NC_005264.1 + 34110 0.66 0.96287
Target:  5'- gGCUCAGcggcgcGAAACaGCGUCGAGgcgcgagccCGCCUCc -3'
miRNA:   3'- -CGGGUC------UUUUG-CGCAGCUC---------GUGGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.