miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24378 3' -56.1 NC_005264.1 + 159423 0.67 0.839889
Target:  5'- gUGggGcGCGCCGCCUUccaugGUCGUUccGCUCa -3'
miRNA:   3'- uGCuuU-UGCGGCGGAA-----CGGCGA--CGAG- -5'
24378 3' -56.1 NC_005264.1 + 64799 0.67 0.848004
Target:  5'- aACGAGu-UGCCGUUaaUUGCCGCgagGCUg -3'
miRNA:   3'- -UGCUUuuGCGGCGG--AACGGCGa--CGAg -5'
24378 3' -56.1 NC_005264.1 + 94112 0.67 0.871134
Target:  5'- cCGAGguucuGGCGCCGCUggUGgaaagguacCCGCUGCUg -3'
miRNA:   3'- uGCUU-----UUGCGGCGGa-AC---------GGCGACGAg -5'
24378 3' -56.1 NC_005264.1 + 113676 0.66 0.898915
Target:  5'- cCGAAAcuUGCCGCg--GCCGCUGUg- -3'
miRNA:   3'- uGCUUUu-GCGGCGgaaCGGCGACGag -5'
24378 3' -56.1 NC_005264.1 + 145480 0.68 0.805592
Target:  5'- -aGAccGCGCCGCCgccagcUGCCGCggaagGCa- -3'
miRNA:   3'- ugCUuuUGCGGCGGa-----ACGGCGa----CGag -5'
24378 3' -56.1 NC_005264.1 + 36750 0.68 0.823092
Target:  5'- cGCGAcgGCGCCgGCCggcGCCGUcgccGCUUg -3'
miRNA:   3'- -UGCUuuUGCGG-CGGaa-CGGCGa---CGAG- -5'
24378 3' -56.1 NC_005264.1 + 10457 0.67 0.851195
Target:  5'- aGCGGAu-CGCCGCCgauagGCCGgaucccggucggaacCUGCUa -3'
miRNA:   3'- -UGCUUuuGCGGCGGaa---CGGC---------------GACGAg -5'
24378 3' -56.1 NC_005264.1 + 31459 0.66 0.905284
Target:  5'- gACGAGAGCGUCGCCgaugGgCGUggauggUGCg- -3'
miRNA:   3'- -UGCUUUUGCGGCGGaa--CgGCG------ACGag -5'
24378 3' -56.1 NC_005264.1 + 155475 0.67 0.830742
Target:  5'- aAUGAAAACcgcggcgGCCGCCagauuUUGCCGgUGCg- -3'
miRNA:   3'- -UGCUUUUG-------CGGCGG-----AACGGCgACGag -5'
24378 3' -56.1 NC_005264.1 + 38384 0.66 0.905284
Target:  5'- gGCGAGAGCGgcgaCGCCgagacagaUGCCGCguacgcccUGCUg -3'
miRNA:   3'- -UGCUUUUGCg---GCGGa-------ACGGCG--------ACGAg -5'
24378 3' -56.1 NC_005264.1 + 4618 0.67 0.848004
Target:  5'- gGCGuAGGCGCguucucgaaaauCGCCggGCCGCUuCUCg -3'
miRNA:   3'- -UGCuUUUGCG------------GCGGaaCGGCGAcGAG- -5'
24378 3' -56.1 NC_005264.1 + 46940 0.67 0.839889
Target:  5'- uACGggGACGgguucccgacuCCGUCUaGCgGCUcGCUCa -3'
miRNA:   3'- -UGCuuUUGC-----------GGCGGAaCGgCGA-CGAG- -5'
24378 3' -56.1 NC_005264.1 + 135377 0.67 0.863633
Target:  5'- -aGAAAAUGUC-CUUUGCUGCgccGCUCg -3'
miRNA:   3'- ugCUUUUGCGGcGGAACGGCGa--CGAG- -5'
24378 3' -56.1 NC_005264.1 + 158791 0.67 0.866659
Target:  5'- gACGAAGAggaggaccaauuauuCGCCgagGCCUUGCCcCcGCUCu -3'
miRNA:   3'- -UGCUUUU---------------GCGG---CGGAACGGcGaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 97239 0.66 0.881268
Target:  5'- cGCGAAcgcagcagcaagauGugGCCGCCgggccuuggcacggUagugGCCGCUGcCUCg -3'
miRNA:   3'- -UGCUU--------------UugCGGCGG--------------Aa---CGGCGAC-GAG- -5'
24378 3' -56.1 NC_005264.1 + 54912 0.66 0.898915
Target:  5'- cGCGAAGgucgcgGCGCUGCUggcgaacgGCUGCgagugGCUCc -3'
miRNA:   3'- -UGCUUU------UGCGGCGGaa------CGGCGa----CGAG- -5'
24378 3' -56.1 NC_005264.1 + 95823 0.69 0.763044
Target:  5'- uGCGcAAGGcCGCCGCuccguccaggcagcaCUcGCCGUUGCUCg -3'
miRNA:   3'- -UGC-UUUU-GCGGCG---------------GAaCGGCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 69966 0.68 0.796599
Target:  5'- -gGAAGACGCUaCCUUgGCgGCUGCg- -3'
miRNA:   3'- ugCUUUUGCGGcGGAA-CGgCGACGag -5'
24378 3' -56.1 NC_005264.1 + 103894 0.68 0.814426
Target:  5'- -gGAAGACGCCGUcaaCUUGC-GCagGCUCc -3'
miRNA:   3'- ugCUUUUGCGGCG---GAACGgCGa-CGAG- -5'
24378 3' -56.1 NC_005264.1 + 105763 0.68 0.814426
Target:  5'- gACGAAGAUG-CGCCc-GCCGCUgacgaggacGCUCu -3'
miRNA:   3'- -UGCUUUUGCgGCGGaaCGGCGA---------CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.