miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24379 3' -59.1 NC_005264.1 + 34294 0.66 0.796709
Target:  5'- --aGUUcGagGGcCCCUCgagggcGCCGCGCCUg -3'
miRNA:   3'- uaaCAA-Cg-CCaGGGAGa-----CGGCGCGGG- -5'
24379 3' -59.1 NC_005264.1 + 45797 0.66 0.796709
Target:  5'- ---aUUGCGGUCUgggCcGCCGCGCUg -3'
miRNA:   3'- uaacAACGCCAGGga-GaCGGCGCGGg -5'
24379 3' -59.1 NC_005264.1 + 19845 0.66 0.796709
Target:  5'- --aGUUGCgGGUCCCcacGCC-CGCCUc -3'
miRNA:   3'- uaaCAACG-CCAGGGagaCGGcGCGGG- -5'
24379 3' -59.1 NC_005264.1 + 4246 0.66 0.796709
Target:  5'- ----cUGCGGagCCUCUugccGCCGCGCa- -3'
miRNA:   3'- uaacaACGCCagGGAGA----CGGCGCGgg -5'
24379 3' -59.1 NC_005264.1 + 153321 0.66 0.796709
Target:  5'- --aGUUcGagGGcCCCUCgagggcGCCGCGCCUg -3'
miRNA:   3'- uaaCAA-Cg-CCaGGGAGa-----CGGCGCGGG- -5'
24379 3' -59.1 NC_005264.1 + 35606 0.66 0.787787
Target:  5'- --cGUUGCGcGUC--UCUGCCGCGgCa -3'
miRNA:   3'- uaaCAACGC-CAGggAGACGGCGCgGg -5'
24379 3' -59.1 NC_005264.1 + 1679 0.66 0.786887
Target:  5'- uUUGUucucucgUGCGGUCUCagcgcacaccCUGCCagGUGCCCg -3'
miRNA:   3'- uAACA-------ACGCCAGGGa---------GACGG--CGCGGG- -5'
24379 3' -59.1 NC_005264.1 + 120706 0.66 0.786887
Target:  5'- uUUGUucucucgUGCGGUCUCagcgcacaccCUGCCagGUGCCCg -3'
miRNA:   3'- uAACA-------ACGCCAGGGa---------GACGG--CGCGGG- -5'
24379 3' -59.1 NC_005264.1 + 12699 0.66 0.778729
Target:  5'- gAUUGUUuuggcgugcGCGGgCCCUCUGacaUGCuccGCCCa -3'
miRNA:   3'- -UAACAA---------CGCCaGGGAGACg--GCG---CGGG- -5'
24379 3' -59.1 NC_005264.1 + 128428 0.66 0.769545
Target:  5'- -----cGCGGgucucggcucauUCCCUgagCUcgaGCCGCGCCCg -3'
miRNA:   3'- uaacaaCGCC------------AGGGA---GA---CGGCGCGGG- -5'
24379 3' -59.1 NC_005264.1 + 64166 0.66 0.760242
Target:  5'- -----aGCGGcUCCCUCUaaGCUaGCGCCg -3'
miRNA:   3'- uaacaaCGCC-AGGGAGA--CGG-CGCGGg -5'
24379 3' -59.1 NC_005264.1 + 142574 0.67 0.731713
Target:  5'- -----aGaCGGUcCCCUCcgcgagGCCGCGCCg -3'
miRNA:   3'- uaacaaC-GCCA-GGGAGa-----CGGCGCGGg -5'
24379 3' -59.1 NC_005264.1 + 58456 0.67 0.731713
Target:  5'- --gGUUGuCGGgcgCCagccuaUCUGCCGCGCg- -3'
miRNA:   3'- uaaCAAC-GCCa--GGg-----AGACGGCGCGgg -5'
24379 3' -59.1 NC_005264.1 + 23925 0.67 0.712262
Target:  5'- -cUGUgucgGCGGUUCUg--GUCGCGCCg -3'
miRNA:   3'- uaACAa---CGCCAGGGagaCGGCGCGGg -5'
24379 3' -59.1 NC_005264.1 + 137160 0.67 0.702434
Target:  5'- ----aUGCGcGUCCCgucccuUCUGCUGCcCCCa -3'
miRNA:   3'- uaacaACGC-CAGGG------AGACGGCGcGGG- -5'
24379 3' -59.1 NC_005264.1 + 65164 0.67 0.702434
Target:  5'- --cGcgGCGGcgCCCUCUcuggccaugGCCGCGgCCu -3'
miRNA:   3'- uaaCaaCGCCa-GGGAGA---------CGGCGCgGG- -5'
24379 3' -59.1 NC_005264.1 + 51095 0.68 0.692548
Target:  5'- -----cGCGGUCgCCggugcugcggUCUGCuCGCGCCUc -3'
miRNA:   3'- uaacaaCGCCAG-GG----------AGACG-GCGCGGG- -5'
24379 3' -59.1 NC_005264.1 + 2185 0.68 0.692548
Target:  5'- --cGUUGC---CCCUCcauUGCCgGCGCCCa -3'
miRNA:   3'- uaaCAACGccaGGGAG---ACGG-CGCGGG- -5'
24379 3' -59.1 NC_005264.1 + 15243 0.68 0.682614
Target:  5'- -----aGUGGUCgUUCUGCaUGCGCCUg -3'
miRNA:   3'- uaacaaCGCCAGgGAGACG-GCGCGGG- -5'
24379 3' -59.1 NC_005264.1 + 74006 0.68 0.682614
Target:  5'- cGUUGUacaUGCGGUCgccgagagagaaUCUCUGC-GaCGCCCa -3'
miRNA:   3'- -UAACA---ACGCCAG------------GGAGACGgC-GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.