miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24379 5' -54.7 NC_005264.1 + 34878 0.66 0.938029
Target:  5'- gCGAGCcauuGCGGUCAaccaaggagcggGCGAuuguuccccccAGCCUCUGUu -3'
miRNA:   3'- aGCUCG----CGCCGGU------------UGUU-----------UCGGAGAUA- -5'
24379 5' -54.7 NC_005264.1 + 145936 0.66 0.938029
Target:  5'- aUCGucCGCGGCCGACGGGaauuUCUCUGc -3'
miRNA:   3'- -AGCucGCGCCGGUUGUUUc---GGAGAUa -5'
24379 5' -54.7 NC_005264.1 + 153904 0.66 0.938029
Target:  5'- gCGAGCcauuGCGGUCAaccaaggagcggGCGAuuguuccccccAGCCUCUGUu -3'
miRNA:   3'- aGCUCG----CGCCGGU------------UGUU-----------UCGGAGAUA- -5'
24379 5' -54.7 NC_005264.1 + 39809 0.66 0.936052
Target:  5'- gCGAuGCGCGGCacgcauccgccuaGAUGGAGCCUgCUGa -3'
miRNA:   3'- aGCU-CGCGCCGg------------UUGUUUCGGA-GAUa -5'
24379 5' -54.7 NC_005264.1 + 83260 0.66 0.935049
Target:  5'- gCGcuGGCGCGGCgAacuucaauuucggccGCAAGGCCUUg-- -3'
miRNA:   3'- aGC--UCGCGCCGgU---------------UGUUUCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 70796 0.66 0.933013
Target:  5'- -gGAGCGCGGCCcACcGA-CCUCc-- -3'
miRNA:   3'- agCUCGCGCCGGuUGuUUcGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 145969 0.66 0.933013
Target:  5'- aUCGuuuGcCGCcGCCGACAAggucaacgagGGCCUCUAc -3'
miRNA:   3'- -AGCu--C-GCGcCGGUUGUU----------UCGGAGAUa -5'
24379 5' -54.7 NC_005264.1 + 157984 0.66 0.933013
Target:  5'- cUCGcAGCGUGGCCG----AGCCuacUCUGUg -3'
miRNA:   3'- -AGC-UCGCGCCGGUuguuUCGG---AGAUA- -5'
24379 5' -54.7 NC_005264.1 + 38957 0.66 0.933013
Target:  5'- cUCGcAGCGUGGCCG----AGCCuacUCUGUg -3'
miRNA:   3'- -AGC-UCGCGCCGGUuguuUCGG---AGAUA- -5'
24379 5' -54.7 NC_005264.1 + 102836 0.66 0.933013
Target:  5'- cUUGGGcCGCGGCC-ACGcGGCCgUCUc- -3'
miRNA:   3'- -AGCUC-GCGCCGGuUGUuUCGG-AGAua -5'
24379 5' -54.7 NC_005264.1 + 5270 0.66 0.927749
Target:  5'- gCGAGuCGCGGCCGgacgGCGGGGCggcggCUGa -3'
miRNA:   3'- aGCUC-GCGCCGGU----UGUUUCGga---GAUa -5'
24379 5' -54.7 NC_005264.1 + 86505 0.66 0.927749
Target:  5'- gUCGccGCGCGGCCAACuuucguGCgUCg-- -3'
miRNA:   3'- -AGCu-CGCGCCGGUUGuuu---CGgAGaua -5'
24379 5' -54.7 NC_005264.1 + 124297 0.66 0.927749
Target:  5'- gCGAGuCGCGGCCGgacgGCGGGGCggcggCUGa -3'
miRNA:   3'- aGCUC-GCGCCGGU----UGUUUCGga---GAUa -5'
24379 5' -54.7 NC_005264.1 + 151356 0.66 0.927749
Target:  5'- ---cGCGCGGCCuucguuaugGGCAGGuCCUCUAUg -3'
miRNA:   3'- agcuCGCGCCGG---------UUGUUUcGGAGAUA- -5'
24379 5' -54.7 NC_005264.1 + 90462 0.66 0.924471
Target:  5'- gCG-GCGCGGCCGucaaACAAAguccaagucccguucGCCUCg-- -3'
miRNA:   3'- aGCuCGCGCCGGU----UGUUU---------------CGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 25380 0.66 0.922235
Target:  5'- -gGAGgGCGGCUAGCAcGGUUUCc-- -3'
miRNA:   3'- agCUCgCGCCGGUUGUuUCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 141457 0.66 0.922235
Target:  5'- aUCGAG-GCGaG-CGGCGGGGCCUCUu- -3'
miRNA:   3'- -AGCUCgCGC-CgGUUGUUUCGGAGAua -5'
24379 5' -54.7 NC_005264.1 + 79963 0.66 0.918808
Target:  5'- aUGAGCGCgacGGCCAGCAAacagagaccgaugccGGCCg---- -3'
miRNA:   3'- aGCUCGCG---CCGGUUGUU---------------UCGGagaua -5'
24379 5' -54.7 NC_005264.1 + 15768 0.66 0.918808
Target:  5'- gCGAGCGUGGCUccgGGCGAgcagagagaacagaaAGCCcgCUAa -3'
miRNA:   3'- aGCUCGCGCCGG---UUGUU---------------UCGGa-GAUa -5'
24379 5' -54.7 NC_005264.1 + 123117 0.66 0.916473
Target:  5'- aCGGGCggcgucGCGGCaCGACGGGGCCg---- -3'
miRNA:   3'- aGCUCG------CGCCG-GUUGUUUCGGagaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.