miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24380 3' -61 NC_005264.1 + 127652 0.66 0.722153
Target:  5'- gGCGCuaGACgGGCUGGggaCGCCCCgaaccuugCCCAc -3'
miRNA:   3'- gCGCG--UUGaCCGAUUg--GCGGGG--------GGGU- -5'
24380 3' -61 NC_005264.1 + 122101 0.66 0.722153
Target:  5'- uCGcCGCGACUGGCggcGGCCGaggaCCCguucgggcgauuCCCGg -3'
miRNA:   3'- -GC-GCGUUGACCGa--UUGGCg---GGG------------GGGU- -5'
24380 3' -61 NC_005264.1 + 106314 0.66 0.722153
Target:  5'- aGCuGCGGCgGGCaGGgCGaCCCCUCCAc -3'
miRNA:   3'- gCG-CGUUGaCCGaUUgGC-GGGGGGGU- -5'
24380 3' -61 NC_005264.1 + 3074 0.66 0.722153
Target:  5'- uCGcCGCGACUGGCggcGGCCGaggaCCCguucgggcgauuCCCGg -3'
miRNA:   3'- -GC-GCGUUGACCGa--UUGGCg---GGG------------GGGU- -5'
24380 3' -61 NC_005264.1 + 146357 0.66 0.71254
Target:  5'- uGaCGCAugUGaCUcgUCGCCCCCCa- -3'
miRNA:   3'- gC-GCGUugACcGAuuGGCGGGGGGgu -5'
24380 3' -61 NC_005264.1 + 34909 0.66 0.71254
Target:  5'- aGgGCAggguuACUGGCccaGugCGCCCgCCUCAg -3'
miRNA:   3'- gCgCGU-----UGACCGa--UugGCGGG-GGGGU- -5'
24380 3' -61 NC_005264.1 + 80926 0.66 0.71254
Target:  5'- aCGCGaCGaucguucuGCUGGCU---CGCCCgCCCAu -3'
miRNA:   3'- -GCGC-GU--------UGACCGAuugGCGGGgGGGU- -5'
24380 3' -61 NC_005264.1 + 133361 0.66 0.71254
Target:  5'- uGCcUAGCccUGcGCUGcACCGCCCCCCa- -3'
miRNA:   3'- gCGcGUUG--AC-CGAU-UGGCGGGGGGgu -5'
24380 3' -61 NC_005264.1 + 107264 0.66 0.71254
Target:  5'- gGCGCAugUccGCUGcaguggGCCGCgcuCCCCCCu -3'
miRNA:   3'- gCGCGUugAc-CGAU------UGGCG---GGGGGGu -5'
24380 3' -61 NC_005264.1 + 7730 0.66 0.702863
Target:  5'- uGCGCAuggccauauGCagGGUUAACaugcuugGCCUCCCCAc -3'
miRNA:   3'- gCGCGU---------UGa-CCGAUUGg------CGGGGGGGU- -5'
24380 3' -61 NC_005264.1 + 144780 0.66 0.702863
Target:  5'- cCGCGCGccCUGGCUcgcggcGCCGCCgCUUCGc -3'
miRNA:   3'- -GCGCGUu-GACCGAu-----UGGCGGgGGGGU- -5'
24380 3' -61 NC_005264.1 + 57990 0.66 0.702863
Target:  5'- cCGCGCGGCggccgUGGCUcAGCgGCCCCg--- -3'
miRNA:   3'- -GCGCGUUG-----ACCGA-UUGgCGGGGgggu -5'
24380 3' -61 NC_005264.1 + 129810 0.66 0.702863
Target:  5'- uCGCGUAGCUGGCgga--GCCCCgUa- -3'
miRNA:   3'- -GCGCGUUGACCGauuggCGGGGgGgu -5'
24380 3' -61 NC_005264.1 + 13402 0.66 0.69313
Target:  5'- cCGcCGCAGCUcuccgcaccGGCgcgcGACCGCCgCCgCCGa -3'
miRNA:   3'- -GC-GCGUUGA---------CCGa---UUGGCGGgGG-GGU- -5'
24380 3' -61 NC_005264.1 + 132429 0.66 0.69313
Target:  5'- cCGcCGCAGCUcuccgcaccGGCgcgcGACCGCCgCCgCCGa -3'
miRNA:   3'- -GC-GCGUUGA---------CCGa---UUGGCGGgGG-GGU- -5'
24380 3' -61 NC_005264.1 + 108322 0.66 0.683349
Target:  5'- uCGCGCcagAAUaaGCguaccGCCGCCUCCCCAg -3'
miRNA:   3'- -GCGCG---UUGacCGau---UGGCGGGGGGGU- -5'
24380 3' -61 NC_005264.1 + 133709 0.66 0.683349
Target:  5'- cCGCGCA-CUGGU--GCUGCCUCUggCCGa -3'
miRNA:   3'- -GCGCGUuGACCGauUGGCGGGGG--GGU- -5'
24380 3' -61 NC_005264.1 + 162459 0.66 0.683349
Target:  5'- cCGCGCc---GGC--GCUGCCCCCCa- -3'
miRNA:   3'- -GCGCGuugaCCGauUGGCGGGGGGgu -5'
24380 3' -61 NC_005264.1 + 125263 0.66 0.673529
Target:  5'- gGCGCGACUuGUUcuUCGCCCUCCgCGg -3'
miRNA:   3'- gCGCGUUGAcCGAuuGGCGGGGGG-GU- -5'
24380 3' -61 NC_005264.1 + 117957 0.66 0.673529
Target:  5'- aGaCGaCGACgGGC---CCGCCUCCCCAg -3'
miRNA:   3'- gC-GC-GUUGaCCGauuGGCGGGGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.