miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24383 3' -64.3 NC_005264.1 + 16099 0.66 0.579755
Target:  5'- cGGGUccGCCGCCCUCGuucGaCCCUAa-- -3'
miRNA:   3'- cCCCG--CGGCGGGAGCuc-C-GGGAUcag -5'
24383 3' -64.3 NC_005264.1 + 18528 0.66 0.579755
Target:  5'- gGGGGCGCCGucuccCCCUgaGGGcGCgCCggcGUCa -3'
miRNA:   3'- -CCCCGCGGC-----GGGAg-CUC-CG-GGau-CAG- -5'
24383 3' -64.3 NC_005264.1 + 95339 0.66 0.570223
Target:  5'- cGGGCGCCGCgaaacggaCUCGGcggggcggcGGCCCggccucgGGUUu -3'
miRNA:   3'- cCCCGCGGCGg-------GAGCU---------CCGGGa------UCAG- -5'
24383 3' -64.3 NC_005264.1 + 3447 0.66 0.570223
Target:  5'- aGGGGUccGCCGCCCgUGGcGCCC-GGUg -3'
miRNA:   3'- -CCCCG--CGGCGGGaGCUcCGGGaUCAg -5'
24383 3' -64.3 NC_005264.1 + 104818 0.66 0.570223
Target:  5'- cGGGCGCCGCa--CGAcGGCCU--GUCc -3'
miRNA:   3'- cCCCGCGGCGggaGCU-CCGGGauCAG- -5'
24383 3' -64.3 NC_005264.1 + 69607 0.66 0.540942
Target:  5'- aGGGCGCCGCCCggCGugagaacgacAGGCUauuggggCUGGg- -3'
miRNA:   3'- cCCCGCGGCGGGa-GC----------UCCGG-------GAUCag -5'
24383 3' -64.3 NC_005264.1 + 98508 0.66 0.532533
Target:  5'- cGGaGGCGCCGa-CggGGGGCCUcAGUCu -3'
miRNA:   3'- -CC-CCGCGGCggGagCUCCGGGaUCAG- -5'
24383 3' -64.3 NC_005264.1 + 40198 0.66 0.532533
Target:  5'- --cGCGcCCGCCCUCGcGGCCCc---- -3'
miRNA:   3'- cccCGC-GGCGGGAGCuCCGGGaucag -5'
24383 3' -64.3 NC_005264.1 + 159225 0.66 0.532533
Target:  5'- --cGCGcCCGCCCUCGcGGCCCc---- -3'
miRNA:   3'- cccCGC-GGCGGGAGCuCCGGGaucag -5'
24383 3' -64.3 NC_005264.1 + 11077 0.66 0.53067
Target:  5'- cGGGUGCCGCCCccucaaugcaaaUGAGGUCacaUGGUa -3'
miRNA:   3'- cCCCGCGGCGGGa-----------GCUCCGGg--AUCAg -5'
24383 3' -64.3 NC_005264.1 + 130104 0.66 0.53067
Target:  5'- cGGGUGCCGCCCccucaaugcaaaUGAGGUCacaUGGUa -3'
miRNA:   3'- cCCCGCGGCGGGa-----------GCUCCGGg--AUCAg -5'
24383 3' -64.3 NC_005264.1 + 94683 0.67 0.514019
Target:  5'- cGGGCGCCGCaacgUUCacauaacGGCCgUGGUCa -3'
miRNA:   3'- cCCCGCGGCGg---GAGcu-----CCGGgAUCAG- -5'
24383 3' -64.3 NC_005264.1 + 67763 0.67 0.495774
Target:  5'- aGGGCGUCGCUUaUCGccAGGCCCaucauGUCu -3'
miRNA:   3'- cCCCGCGGCGGG-AGC--UCCGGGau---CAG- -5'
24383 3' -64.3 NC_005264.1 + 60321 0.67 0.477827
Target:  5'- cGGGGCGUaugggaucguCGagaUCUUGAGGCCCUcGUa -3'
miRNA:   3'- -CCCCGCG----------GCg--GGAGCUCCGGGAuCAg -5'
24383 3' -64.3 NC_005264.1 + 26819 0.67 0.468975
Target:  5'- uGGGccGCGCCGCUCUUGAGcCCCcAGa- -3'
miRNA:   3'- -CCC--CGCGGCGGGAGCUCcGGGaUCag -5'
24383 3' -64.3 NC_005264.1 + 156191 0.67 0.468975
Target:  5'- uGGcGGCGCCGgCUauaugUCGGGGCgCaGGUCc -3'
miRNA:   3'- -CC-CCGCGGCgGG-----AGCUCCGgGaUCAG- -5'
24383 3' -64.3 NC_005264.1 + 69680 0.67 0.466335
Target:  5'- uGGGGCcuugguucuccgcgGUugCGUCCUgGAGGUUCUAGUCc -3'
miRNA:   3'- -CCCCG--------------CG--GCGGGAgCUCCGGGAUCAG- -5'
24383 3' -64.3 NC_005264.1 + 107722 0.68 0.442937
Target:  5'- cGGGGUGUCGaaCCCUCGuGGCUUgggcaAGUUg -3'
miRNA:   3'- -CCCCGCGGC--GGGAGCuCCGGGa----UCAG- -5'
24383 3' -64.3 NC_005264.1 + 7582 0.69 0.408716
Target:  5'- -cGGCuCCGCCCcuaaaccUCGcGGGCUCUGGUCu -3'
miRNA:   3'- ccCCGcGGCGGG-------AGC-UCCGGGAUCAG- -5'
24383 3' -64.3 NC_005264.1 + 126609 0.69 0.408716
Target:  5'- -cGGCuCCGCCCcuaaaccUCGcGGGCUCUGGUCu -3'
miRNA:   3'- ccCCGcGGCGGG-------AGC-UCCGGGAUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.