miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 3' -57.9 NC_005264.1 + 162746 0.69 0.692251
Target:  5'- uCGAGcgGcCCGCGuGCGCCGAuaagUGCGAGGu -3'
miRNA:   3'- -GCUCa-C-GGCGU-CGCGGCUu---GCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 159988 0.68 0.750987
Target:  5'- ----aGCCGCAGCgggcgacgGCgCGAGCGCGAc- -3'
miRNA:   3'- gcucaCGGCGUCG--------CG-GCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 158850 0.66 0.831593
Target:  5'- aGAGaacccGCCGC--CGCCGAAUGCGGc- -3'
miRNA:   3'- gCUCa----CGGCGucGCGGCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 158246 0.68 0.731723
Target:  5'- ----cGCCGCGGCGCUG-GCGgGGAGg -3'
miRNA:   3'- gcucaCGGCGUCGCGGCuUGCgCUUU- -5'
24385 3' -57.9 NC_005264.1 + 157616 0.66 0.838957
Target:  5'- cCGAG-GCCGCGgaagaagagcuucGCcucGCCGcGGCGCGAGAc -3'
miRNA:   3'- -GCUCaCGGCGU-------------CG---CGGC-UUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 155369 0.68 0.712121
Target:  5'- gGAG-GCCGCAcGaCGuucuCCGGACGCGGAGc -3'
miRNA:   3'- gCUCaCGGCGU-C-GC----GGCUUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 154813 0.66 0.823242
Target:  5'- aGGGcGCgGUGGCGCCGucGugGCGGGc -3'
miRNA:   3'- gCUCaCGgCGUCGCGGC--UugCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 154612 0.68 0.712121
Target:  5'- gGAGcUGCUGCGGCuucgGCCGAugGCc--- -3'
miRNA:   3'- gCUC-ACGGCGUCG----CGGCUugCGcuuu -5'
24385 3' -57.9 NC_005264.1 + 153881 0.67 0.779093
Target:  5'- -uGGUGCUGCAGCGaguuggccggcCCGAAgGcCGAGAa -3'
miRNA:   3'- gcUCACGGCGUCGC-----------GGCUUgC-GCUUU- -5'
24385 3' -57.9 NC_005264.1 + 152278 0.7 0.61148
Target:  5'- aCGAG-GaaGCAGCGgCGAACGCGcGAu -3'
miRNA:   3'- -GCUCaCggCGUCGCgGCUUGCGCuUU- -5'
24385 3' -57.9 NC_005264.1 + 150865 0.66 0.831593
Target:  5'- --cGUGCCGC-GCGCggcaagacaUGGGCGCGAc- -3'
miRNA:   3'- gcuCACGGCGuCGCG---------GCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 142678 0.7 0.62059
Target:  5'- aCGucGUGCCGCgaucuugGGCGCCGGcgGCGCGc-- -3'
miRNA:   3'- -GCu-CACGGCG-------UCGCGGCU--UGCGCuuu -5'
24385 3' -57.9 NC_005264.1 + 138337 0.7 0.631735
Target:  5'- gCGcGUGCgCGacaaGGCGcCCGAACGCGAc- -3'
miRNA:   3'- -GCuCACG-GCg---UCGC-GGCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 135566 0.67 0.797199
Target:  5'- uCGAGaaGCCGC-GCGUCGcuCGCGAc- -3'
miRNA:   3'- -GCUCa-CGGCGuCGCGGCuuGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 135113 0.66 0.839766
Target:  5'- uGGGUGCCGUgccguuCGCCGAAuuaugcccCGCGAc- -3'
miRNA:   3'- gCUCACGGCGuc----GCGGCUU--------GCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 132768 0.67 0.769842
Target:  5'- cCGGGcGCgGCGGCGCCGA-CGaGggGc -3'
miRNA:   3'- -GCUCaCGgCGUCGCGGCUuGCgCuuU- -5'
24385 3' -57.9 NC_005264.1 + 132467 0.68 0.72196
Target:  5'- cCGAGacgcgacGCgGCGGCGCCGAAggggcuccUGCGggGa -3'
miRNA:   3'- -GCUCa------CGgCGUCGCGGCUU--------GCGCuuU- -5'
24385 3' -57.9 NC_005264.1 + 129552 0.67 0.788215
Target:  5'- gCGGGU-CCuguGCGGCGCCGcccucaggGGCGCGGAu -3'
miRNA:   3'- -GCUCAcGG---CGUCGCGGC--------UUGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 129507 0.71 0.54142
Target:  5'- aGGGUuUgGCGGCGCCGGAgGCGAc- -3'
miRNA:   3'- gCUCAcGgCGUCGCGGCUUgCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 129312 0.66 0.847754
Target:  5'- ----cGCgGCAGCGCCGAcccuAUGgGAAAg -3'
miRNA:   3'- gcucaCGgCGUCGCGGCU----UGCgCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.