miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 3' -57.9 NC_005264.1 + 129312 0.66 0.847754
Target:  5'- ----cGCgGCAGCGCCGAcccuAUGgGAAAg -3'
miRNA:   3'- gcucaCGgCGUCGCGGCU----UGCgCUUU- -5'
24385 3' -57.9 NC_005264.1 + 153881 0.67 0.779093
Target:  5'- -uGGUGCUGCAGCGaguuggccggcCCGAAgGcCGAGAa -3'
miRNA:   3'- gcUCACGGCGUCGC-----------GGCUUgC-GCUUU- -5'
24385 3' -57.9 NC_005264.1 + 76074 0.67 0.769842
Target:  5'- gCGAc-GCCGCgAGCGUCGAcggcucuacggGCGCGAAc -3'
miRNA:   3'- -GCUcaCGGCG-UCGCGGCU-----------UGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 120406 1.06 0.003153
Target:  5'- gCGAGUGCCGCAGCGCCGAACGCGAAAu -3'
miRNA:   3'- -GCUCACGGCGUCGCGGCUUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 95324 0.66 0.831593
Target:  5'- gGAGauUGCCGC--CGCCGGGCgccGCGAAAc -3'
miRNA:   3'- gCUC--ACGGCGucGCGGCUUG---CGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 31839 0.66 0.831593
Target:  5'- --cGUGCCGC-GCGCggcaagacaUGGGCGCGAc- -3'
miRNA:   3'- gcuCACGGCGuCGCG---------GCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 35787 0.66 0.823242
Target:  5'- aGGGcGCgGUGGCGCCGucGugGCGGGc -3'
miRNA:   3'- gCUCaCGgCGUCGCGGC--UugCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 121115 0.66 0.814721
Target:  5'- ----cGCCGCuGcCGCCuGGCGCGAGAa -3'
miRNA:   3'- gcucaCGGCGuC-GCGGcUUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 110125 0.67 0.806037
Target:  5'- cCGAGaGCCGCcGCGCuuuugggggCGGGCgGCGAAAc -3'
miRNA:   3'- -GCUCaCGGCGuCGCG---------GCUUG-CGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 57367 0.67 0.782758
Target:  5'- uGGGUGCCGUguuaaccuucgguggGGCgcaGCCGAuuCGCGAu- -3'
miRNA:   3'- gCUCACGGCG---------------UCG---CGGCUu-GCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 87755 0.67 0.797199
Target:  5'- gCGccUGCCGCAGCGCC----GCGAAGa -3'
miRNA:   3'- -GCucACGGCGUCGCGGcuugCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 43856 0.66 0.814721
Target:  5'- gGGGcUGCCGCGGgGaagagacggaaCGAGCGCGGc- -3'
miRNA:   3'- gCUC-ACGGCGUCgCg----------GCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 135113 0.66 0.839766
Target:  5'- uGGGUGCCGUgccguuCGCCGAAuuaugcccCGCGAc- -3'
miRNA:   3'- gCUCACGGCGuc----GCGGCUU--------GCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 67252 0.67 0.797199
Target:  5'- gGGGUaGCCGCuaaagcGCGCUGugguauagacGACGCGAAu -3'
miRNA:   3'- gCUCA-CGGCGu-----CGCGGC----------UUGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 38589 0.66 0.838957
Target:  5'- cCGAG-GCCGCGgaagaagagcuucGCcucGCCGcGGCGCGAGAc -3'
miRNA:   3'- -GCUCaCGGCGU-------------CG---CGGC-UUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 12963 0.66 0.814721
Target:  5'- cCGGGcgGCgCGCGcCGCCGAcgacgACGCGAGc -3'
miRNA:   3'- -GCUCa-CG-GCGUcGCGGCU-----UGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 10525 0.67 0.788215
Target:  5'- gCGGGU-CCuguGCGGCGCCGcccucaggGGCGCGGAu -3'
miRNA:   3'- -GCUCAcGG---CGUCGCGGC--------UUGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 132768 0.67 0.769842
Target:  5'- cCGGGcGCgGCGGCGCCGA-CGaGggGc -3'
miRNA:   3'- -GCUCaCGgCGUCGCGGCUuGCgCuuU- -5'
24385 3' -57.9 NC_005264.1 + 158850 0.66 0.831593
Target:  5'- aGAGaacccGCCGC--CGCCGAAUGCGGc- -3'
miRNA:   3'- gCUCa----CGGCGucGCGGCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 109692 0.66 0.823242
Target:  5'- aCGAGcaguaccGCCGUAGCGCUacugaaGugGCGAGAa -3'
miRNA:   3'- -GCUCa------CGGCGUCGCGGc-----UugCGCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.