miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 5' -53.9 NC_005264.1 + 160340 0.73 0.702582
Target:  5'- cGCUgaagUCGCGCGaggcCCGCCGaCCAuCGUCg -3'
miRNA:   3'- -CGA----AGCGCGUaaa-GGUGGC-GGU-GCAG- -5'
24385 5' -53.9 NC_005264.1 + 158234 0.66 0.964285
Target:  5'- ---aCGCGCcua--CGCCGCCGCGg- -3'
miRNA:   3'- cgaaGCGCGuaaagGUGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 158087 0.66 0.970538
Target:  5'- -gUUCGCGCGgcggUCCACCcCCggACGcCg -3'
miRNA:   3'- cgAAGCGCGUaa--AGGUGGcGG--UGCaG- -5'
24385 5' -53.9 NC_005264.1 + 157311 0.68 0.907357
Target:  5'- cGCUcCGCGCGaga-CGCCGCgGCuGUCa -3'
miRNA:   3'- -CGAaGCGCGUaaagGUGGCGgUG-CAG- -5'
24385 5' -53.9 NC_005264.1 + 157186 0.66 0.970538
Target:  5'- aGCaugCGUGCGa--CUACCGCCGCGc- -3'
miRNA:   3'- -CGaa-GCGCGUaaaGGUGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 157079 0.67 0.943382
Target:  5'- --gUCGCGUGggucucccagcuuuUUUCUugCGCgGCGUCa -3'
miRNA:   3'- cgaAGCGCGU--------------AAAGGugGCGgUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 156809 0.68 0.924836
Target:  5'- cCUUCGCGCcguugGUUuuccccggagccUCC-CCGCC-CGUCg -3'
miRNA:   3'- cGAAGCGCG-----UAA------------AGGuGGCGGuGCAG- -5'
24385 5' -53.9 NC_005264.1 + 153941 0.67 0.935273
Target:  5'- ---aCGCGCGUcUCCAgCGaCACGUUg -3'
miRNA:   3'- cgaaGCGCGUAaAGGUgGCgGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 152012 0.66 0.964285
Target:  5'- gGC-UCGCGCAUaucgCCAUCggGCgCugGUCg -3'
miRNA:   3'- -CGaAGCGCGUAaa--GGUGG--CG-GugCAG- -5'
24385 5' -53.9 NC_005264.1 + 150813 0.71 0.761916
Target:  5'- cGCUUCGCcuaaggGCGgcggUCGCCGCCGCagGUCg -3'
miRNA:   3'- -CGAAGCG------CGUaaa-GGUGGCGGUG--CAG- -5'
24385 5' -53.9 NC_005264.1 + 149498 0.67 0.930176
Target:  5'- cGCUcgauUCGCGCcgUUCCcuucgGCUuaGCCagGCGUCg -3'
miRNA:   3'- -CGA----AGCGCGuaAAGG-----UGG--CGG--UGCAG- -5'
24385 5' -53.9 NC_005264.1 + 148781 0.69 0.887725
Target:  5'- uCUggCGUGCAcgUUCCcacccggccCCGCCACGUCc -3'
miRNA:   3'- cGAa-GCGCGUa-AAGGu--------GGCGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 147617 0.66 0.970538
Target:  5'- aCUUagaGCGCAgg---AUCGCCGCGUCa -3'
miRNA:   3'- cGAAg--CGCGUaaaggUGGCGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 146512 0.67 0.949115
Target:  5'- ---cCGCGCggUUCCAgaGCUacGCGUCg -3'
miRNA:   3'- cgaaGCGCGuaAAGGUggCGG--UGCAG- -5'
24385 5' -53.9 NC_005264.1 + 144791 0.69 0.887725
Target:  5'- gGC-UCGCGgcg--CCGCCGCUucGCGUCg -3'
miRNA:   3'- -CGaAGCGCguaaaGGUGGCGG--UGCAG- -5'
24385 5' -53.9 NC_005264.1 + 139990 0.67 0.949115
Target:  5'- aGgUUCGCGCGg--CC-UCGCC-CGUCc -3'
miRNA:   3'- -CgAAGCGCGUaaaGGuGGCGGuGCAG- -5'
24385 5' -53.9 NC_005264.1 + 137210 0.71 0.77145
Target:  5'- cGCggaGCGCGgccCCACCGCCGCcGUg -3'
miRNA:   3'- -CGaagCGCGUaaaGGUGGCGGUG-CAg -5'
24385 5' -53.9 NC_005264.1 + 137179 0.66 0.960833
Target:  5'- ---aCGCGaUcgUUCCGCUGCuCACGUa -3'
miRNA:   3'- cgaaGCGC-GuaAAGGUGGCG-GUGCAg -5'
24385 5' -53.9 NC_005264.1 + 136060 0.67 0.949115
Target:  5'- aGCccgCGUGCAggaucgagUCggaUACCGCCGCGUUg -3'
miRNA:   3'- -CGaa-GCGCGUaa------AG---GUGGCGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 134784 0.69 0.873484
Target:  5'- cGCUUcCGCGCGcUUUUACC-CgGCGUCg -3'
miRNA:   3'- -CGAA-GCGCGUaAAGGUGGcGgUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.