miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24388 3' -44.5 NC_005264.1 + 111596 0.66 1
Target:  5'- uCGuGGuggcuGCACAACGCGCU-GUGg -3'
miRNA:   3'- -GCuUCuaguuUGUGUUGCGCGAaUAC- -5'
24388 3' -44.5 NC_005264.1 + 80112 0.66 1
Target:  5'- uCGAGGAUgacggggCAAGCGCAgagcaaguAUGCGCUauUGg -3'
miRNA:   3'- -GCUUCUA-------GUUUGUGU--------UGCGCGAauAC- -5'
24388 3' -44.5 NC_005264.1 + 21296 0.66 0.999999
Target:  5'- gGggGAcgCGGAC-CAugGCGgaCUUAUGg -3'
miRNA:   3'- gCuuCUa-GUUUGuGUugCGC--GAAUAC- -5'
24388 3' -44.5 NC_005264.1 + 83174 0.66 0.999999
Target:  5'- aUGggGAgaauuugucagcggCAGGCGCGGCGCGaacUAUGc -3'
miRNA:   3'- -GCuuCUa-------------GUUUGUGUUGCGCga-AUAC- -5'
24388 3' -44.5 NC_005264.1 + 98519 0.66 0.999999
Target:  5'- aCGggGGgccUCAgucuuggcAGCgGCAACGCGCU-GUGg -3'
miRNA:   3'- -GCuuCU---AGU--------UUG-UGUUGCGCGAaUAC- -5'
24388 3' -44.5 NC_005264.1 + 49230 0.66 0.999999
Target:  5'- gCGAcAGGUCAuGCACGAgUGCGCg---- -3'
miRNA:   3'- -GCU-UCUAGUuUGUGUU-GCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 85852 0.66 0.999999
Target:  5'- cCGGAGGgaggccCAuAgAUGGCGUGCUUGUGa -3'
miRNA:   3'- -GCUUCUa-----GUuUgUGUUGCGCGAAUAC- -5'
24388 3' -44.5 NC_005264.1 + 148298 0.66 0.999999
Target:  5'- uGGAGAcCGcGCGCGuGCGCGCcgGUGu -3'
miRNA:   3'- gCUUCUaGUuUGUGU-UGCGCGaaUAC- -5'
24388 3' -44.5 NC_005264.1 + 54406 0.66 0.999999
Target:  5'- aGAAG-UCGuuguuGCGCGGCGCGCc---- -3'
miRNA:   3'- gCUUCuAGUu----UGUGUUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 103957 0.66 0.999999
Target:  5'- ---uGcgCGAACGCGugGCGCUg--- -3'
miRNA:   3'- gcuuCuaGUUUGUGUugCGCGAauac -5'
24388 3' -44.5 NC_005264.1 + 22138 0.66 0.999999
Target:  5'- ------aCGAGCGCGACGCGCg---- -3'
miRNA:   3'- gcuucuaGUUUGUGUUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 121429 0.66 0.999999
Target:  5'- -uGGGAUUucuggcguguccgAGACACAGCGCGCg---- -3'
miRNA:   3'- gcUUCUAG-------------UUUGUGUUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 146626 0.66 0.999999
Target:  5'- aGAGGGU--AGCGCGGCGCGUc---- -3'
miRNA:   3'- gCUUCUAguUUGUGUUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 56394 0.66 0.999998
Target:  5'- uGAGGcgcgacgaucgcauAUCGAGCGCGGCGCcgucgaGCUUcgGg -3'
miRNA:   3'- gCUUC--------------UAGUUUGUGUUGCG------CGAAuaC- -5'
24388 3' -44.5 NC_005264.1 + 55756 0.66 0.999998
Target:  5'- -uGAGAgCGAACACAACGCucgcgcugagucuGCUUAa- -3'
miRNA:   3'- gcUUCUaGUUUGUGUUGCG-------------CGAAUac -5'
24388 3' -44.5 NC_005264.1 + 138205 0.66 0.999998
Target:  5'- uGggGAUUAAGCAU---GCGCUgcgcgGUGa -3'
miRNA:   3'- gCuuCUAGUUUGUGuugCGCGAa----UAC- -5'
24388 3' -44.5 NC_005264.1 + 76133 0.67 0.999995
Target:  5'- uGcAGAUCuuGCGCGACGCGgUa--- -3'
miRNA:   3'- gCuUCUAGuuUGUGUUGCGCgAauac -5'
24388 3' -44.5 NC_005264.1 + 34009 0.67 0.999995
Target:  5'- cCGGAGA-CGAugACGACGCGg----- -3'
miRNA:   3'- -GCUUCUaGUUugUGUUGCGCgaauac -5'
24388 3' -44.5 NC_005264.1 + 133240 0.67 0.999995
Target:  5'- uCGAAGc-CAAGCGcCGACGCGCa---- -3'
miRNA:   3'- -GCUUCuaGUUUGU-GUUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 122489 0.67 0.99999
Target:  5'- aCGAGGGucUCGGGgGCGAUGgGCUUGc- -3'
miRNA:   3'- -GCUUCU--AGUUUgUGUUGCgCGAAUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.