miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24388 3' -44.5 NC_005264.1 + 49230 0.66 0.999999
Target:  5'- gCGAcAGGUCAuGCACGAgUGCGCg---- -3'
miRNA:   3'- -GCU-UCUAGUuUGUGUU-GCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 123896 0.7 0.999595
Target:  5'- uCGGAGAUCGAGgagaucaGCAGCaCGUUUGUGa -3'
miRNA:   3'- -GCUUCUAGUUUg------UGUUGcGCGAAUAC- -5'
24388 3' -44.5 NC_005264.1 + 120644 0.7 0.999595
Target:  5'- -aAAGG-CGGACACAGaCGCGCUcGUGg -3'
miRNA:   3'- gcUUCUaGUUUGUGUU-GCGCGAaUAC- -5'
24388 3' -44.5 NC_005264.1 + 119386 1.12 0.030303
Target:  5'- gCGAAGAUCAAACACAACGCGCUUAUGg -3'
miRNA:   3'- -GCUUCUAGUUUGUGUUGCGCGAAUAC- -5'
24388 3' -44.5 NC_005264.1 + 98519 0.66 0.999999
Target:  5'- aCGggGGgccUCAgucuuggcAGCgGCAACGCGCU-GUGg -3'
miRNA:   3'- -GCuuCU---AGU--------UUG-UGUUGCGCGAaUAC- -5'
24388 3' -44.5 NC_005264.1 + 121429 0.66 0.999999
Target:  5'- -uGGGAUUucuggcguguccgAGACACAGCGCGCg---- -3'
miRNA:   3'- gcUUCUAG-------------UUUGUGUUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 127851 0.67 0.99999
Target:  5'- cCGgcGGUCuaGAACcCGGCGCGCgaAUGg -3'
miRNA:   3'- -GCuuCUAG--UUUGuGUUGCGCGaaUAC- -5'
24388 3' -44.5 NC_005264.1 + 24624 0.67 0.99999
Target:  5'- cCGAuuGGUCAccGCGCAGCGCauGCUUAa- -3'
miRNA:   3'- -GCUu-CUAGUu-UGUGUUGCG--CGAAUac -5'
24388 3' -44.5 NC_005264.1 + 153356 0.68 0.999974
Target:  5'- gGggGAggcggCAGACAaGACGCGCg---- -3'
miRNA:   3'- gCuuCUa----GUUUGUgUUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 82629 0.7 0.99975
Target:  5'- aGggGAUau-GCGCGugGCGUUUgcGUGg -3'
miRNA:   3'- gCuuCUAguuUGUGUugCGCGAA--UAC- -5'
24388 3' -44.5 NC_005264.1 + 33589 0.68 0.999952
Target:  5'- --cGGGUCAccCGCGGCGCGUUUGg- -3'
miRNA:   3'- gcuUCUAGUuuGUGUUGCGCGAAUac -5'
24388 3' -44.5 NC_005264.1 + 30626 0.68 0.999986
Target:  5'- gCGAcGGAUCcgcGCGCAGCGCGUa---- -3'
miRNA:   3'- -GCU-UCUAGuu-UGUGUUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 21296 0.66 0.999999
Target:  5'- gGggGAcgCGGAC-CAugGCGgaCUUAUGg -3'
miRNA:   3'- gCuuCUa-GUUUGuGUugCGC--GAAUAC- -5'
24388 3' -44.5 NC_005264.1 + 96885 0.69 0.999886
Target:  5'- uGAAGAUgGcAugGCGGCGCGCg---- -3'
miRNA:   3'- gCUUCUAgU-UugUGUUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 83174 0.66 0.999999
Target:  5'- aUGggGAgaauuugucagcggCAGGCGCGGCGCGaacUAUGc -3'
miRNA:   3'- -GCuuCUa-------------GUUUGUGUUGCGCga-AUAC- -5'
24388 3' -44.5 NC_005264.1 + 3462 0.67 0.99999
Target:  5'- aCGAGGGucUCGGGgGCGAUGgGCUUGc- -3'
miRNA:   3'- -GCUUCU--AGUUUgUGUUGCgCGAAUac -5'
24388 3' -44.5 NC_005264.1 + 49346 0.69 0.999886
Target:  5'- aCGAGGGUCGcgguuGGCACu-CGCGCgaccGUGg -3'
miRNA:   3'- -GCUUCUAGU-----UUGUGuuGCGCGaa--UAC- -5'
24388 3' -44.5 NC_005264.1 + 93964 0.7 0.999595
Target:  5'- uCGAAGAcgGAGCugAACGCGCc---- -3'
miRNA:   3'- -GCUUCUagUUUGugUUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 146626 0.66 0.999999
Target:  5'- aGAGGGU--AGCGCGGCGCGUc---- -3'
miRNA:   3'- gCUUCUAguUUGUGUUGCGCGaauac -5'
24388 3' -44.5 NC_005264.1 + 76133 0.67 0.999995
Target:  5'- uGcAGAUCuuGCGCGACGCGgUa--- -3'
miRNA:   3'- gCuUCUAGuuUGUGUUGCGCgAauac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.