miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24388 5' -61.2 NC_005264.1 + 156168 0.66 0.70722
Target:  5'- cGCAUaugCGCGGCUuugcGGCGuGGCGGc--- -3'
miRNA:   3'- aCGUGa--GCGCCGA----CCGC-CCGCUagag -5'
24388 5' -61.2 NC_005264.1 + 100412 0.66 0.697491
Target:  5'- cGCACUagaGCGGaucaaGUGGGUGAUCg- -3'
miRNA:   3'- aCGUGAg--CGCCgac--CGCCCGCUAGag -5'
24388 5' -61.2 NC_005264.1 + 72727 0.66 0.697491
Target:  5'- cGCACgccaCGCGGUacacuucGGCGGGCcuguccgcuggGAUCUg -3'
miRNA:   3'- aCGUGa---GCGCCGa------CCGCCCG-----------CUAGAg -5'
24388 5' -61.2 NC_005264.1 + 3987 0.66 0.687711
Target:  5'- aGcCGCUUcgGCGGC-GGCGGGU--UCUCu -3'
miRNA:   3'- aC-GUGAG--CGCCGaCCGCCCGcuAGAG- -5'
24388 5' -61.2 NC_005264.1 + 117426 0.66 0.687711
Target:  5'- gGCugUCGCGGC-GcGCaGGGCGccgccCUCc -3'
miRNA:   3'- aCGugAGCGCCGaC-CG-CCCGCua---GAG- -5'
24388 5' -61.2 NC_005264.1 + 95591 0.66 0.687711
Target:  5'- gGCucuCUCGUGGCU-GCGGGauuuCGggCUCu -3'
miRNA:   3'- aCGu--GAGCGCCGAcCGCCC----GCuaGAG- -5'
24388 5' -61.2 NC_005264.1 + 146774 0.66 0.677887
Target:  5'- aGCGCcgCGCGGCgguucucGGUGcGGCGGUgUg -3'
miRNA:   3'- aCGUGa-GCGCCGa------CCGC-CCGCUAgAg -5'
24388 5' -61.2 NC_005264.1 + 156169 0.66 0.677887
Target:  5'- gGC-CUCGCuGCUGGCGccagGAUCUCu -3'
miRNA:   3'- aCGuGAGCGcCGACCGCccg-CUAGAG- -5'
24388 5' -61.2 NC_005264.1 + 37142 0.66 0.677887
Target:  5'- gGC-CUCGCuGCUGGCGccagGAUCUCu -3'
miRNA:   3'- aCGuGAGCGcCGACCGCccg-CUAGAG- -5'
24388 5' -61.2 NC_005264.1 + 123484 0.66 0.677887
Target:  5'- gGCAUgcgguggccgCGCGGUUGcUGGGCGAUgugCUCg -3'
miRNA:   3'- aCGUGa---------GCGCCGACcGCCCGCUA---GAG- -5'
24388 5' -61.2 NC_005264.1 + 48085 0.66 0.677887
Target:  5'- cGCaauACUCGCGGCcGcGCGGGU--UCUg -3'
miRNA:   3'- aCG---UGAGCGCCGaC-CGCCCGcuAGAg -5'
24388 5' -61.2 NC_005264.1 + 121500 0.66 0.671975
Target:  5'- gGCcUUCGCGGCUgcuucgacgauggucGGCGGGC---CUCg -3'
miRNA:   3'- aCGuGAGCGCCGA---------------CCGCCCGcuaGAG- -5'
24388 5' -61.2 NC_005264.1 + 2473 0.66 0.671975
Target:  5'- gGCcUUCGCGGCUgcuucgacgauggucGGCGGGC---CUCg -3'
miRNA:   3'- aCGuGAGCGCCGA---------------CCGCCCGcuaGAG- -5'
24388 5' -61.2 NC_005264.1 + 16408 0.66 0.668027
Target:  5'- gGCACUCG-GGgaGGCaaGGGCcg-CUCg -3'
miRNA:   3'- aCGUGAGCgCCgaCCG--CCCGcuaGAG- -5'
24388 5' -61.2 NC_005264.1 + 121875 0.66 0.658141
Target:  5'- cGCGCUCGCGccgucgcccGCU-GCGGcuGCGAUCg- -3'
miRNA:   3'- aCGUGAGCGC---------CGAcCGCC--CGCUAGag -5'
24388 5' -61.2 NC_005264.1 + 2849 0.66 0.658141
Target:  5'- cGCGCUCGCGccgucgcccGCU-GCGGcuGCGAUCg- -3'
miRNA:   3'- aCGUGAGCGC---------CGAcCGCC--CGCUAGag -5'
24388 5' -61.2 NC_005264.1 + 51109 0.66 0.657151
Target:  5'- cUGCggucuGCUCGCGccucgacGCUGGCGGGCa----- -3'
miRNA:   3'- -ACG-----UGAGCGC-------CGACCGCCCGcuagag -5'
24388 5' -61.2 NC_005264.1 + 102647 0.66 0.648235
Target:  5'- cGCACUCGCuuGGUauuguggGGCGaGCGGUCg- -3'
miRNA:   3'- aCGUGAGCG--CCGa------CCGCcCGCUAGag -5'
24388 5' -61.2 NC_005264.1 + 35789 0.66 0.647243
Target:  5'- gGCGCg-GUGGCgccgucgUGGCGGGCGc-CUCu -3'
miRNA:   3'- aCGUGagCGCCG-------ACCGCCCGCuaGAG- -5'
24388 5' -61.2 NC_005264.1 + 154815 0.66 0.647243
Target:  5'- gGCGCg-GUGGCgccgucgUGGCGGGCGc-CUCu -3'
miRNA:   3'- aCGUGagCGCCG-------ACCGCCCGCuaGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.