miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24389 3' -53.2 NC_005264.1 + 3399 0.66 0.982818
Target:  5'- -gAACGCGgGGUCgguGCGCGGGGgagGGa -3'
miRNA:   3'- caUUGCGCgCUGG---UGCGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 37588 0.67 0.961223
Target:  5'- aGUcuCGCgGCGGCCGCGgCGGGGggucaaaGGa -3'
miRNA:   3'- -CAuuGCG-CGCUGGUGC-GCUCCaaa----CC- -5'
24389 3' -53.2 NC_005264.1 + 37976 0.68 0.953733
Target:  5'- aUAAC-CGCGGCCAgGCGAG---UGGc -3'
miRNA:   3'- cAUUGcGCGCUGGUgCGCUCcaaACC- -5'
24389 3' -53.2 NC_005264.1 + 119215 1.1 0.005397
Target:  5'- cGUAACGCGCGACCACGCGAGGUUUGGc -3'
miRNA:   3'- -CAUUGCGCGCUGGUGCGCUCCAAACC- -5'
24389 3' -53.2 NC_005264.1 + 6488 0.66 0.976179
Target:  5'- ---gUGCGCGGCCAU-CGAGGgccGGu -3'
miRNA:   3'- cauuGCGCGCUGGUGcGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 51808 0.66 0.973595
Target:  5'- ---cCGCGCGAgCCAcCGCuucgaaccaggaGAGGggUGGg -3'
miRNA:   3'- cauuGCGCGCU-GGU-GCG------------CUCCaaACC- -5'
24389 3' -53.2 NC_005264.1 + 87653 0.66 0.973595
Target:  5'- -gGGCGCGgGACCugGCGGcaacgGGc -3'
miRNA:   3'- caUUGCGCgCUGGugCGCUccaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 104697 0.66 0.973326
Target:  5'- aUAACGUGacggagcaccagaCGGCUGCGCGAGGUc--- -3'
miRNA:   3'- cAUUGCGC-------------GCUGGUGCGCUCCAaacc -5'
24389 3' -53.2 NC_005264.1 + 85425 0.67 0.96783
Target:  5'- -cAACGC-CGACCGCGCGgacAGGg---- -3'
miRNA:   3'- caUUGCGcGCUGGUGCGC---UCCaaacc -5'
24389 3' -53.2 NC_005264.1 + 1204 0.67 0.961223
Target:  5'- -gGGCGUccGCGGCCAUggcuGCGGGGUUg-- -3'
miRNA:   3'- caUUGCG--CGCUGGUG----CGCUCCAAacc -5'
24389 3' -53.2 NC_005264.1 + 131575 0.67 0.964635
Target:  5'- ---gUGCGCGgcACCugGCGccuAGGUgUGGa -3'
miRNA:   3'- cauuGCGCGC--UGGugCGC---UCCAaACC- -5'
24389 3' -53.2 NC_005264.1 + 109706 0.67 0.96783
Target:  5'- cGUAGCGCuacugaagugGCGAgaaUACGCGAGGccgcUGGa -3'
miRNA:   3'- -CAUUGCG----------CGCUg--GUGCGCUCCaa--ACC- -5'
24389 3' -53.2 NC_005264.1 + 129495 0.66 0.980783
Target:  5'- -----uUGCGGCgGCGCaGGGUUUGGc -3'
miRNA:   3'- cauugcGCGCUGgUGCGcUCCAAACC- -5'
24389 3' -53.2 NC_005264.1 + 40966 0.67 0.964635
Target:  5'- -cAGCGgGCGACgGCGCGAGc----- -3'
miRNA:   3'- caUUGCgCGCUGgUGCGCUCcaaacc -5'
24389 3' -53.2 NC_005264.1 + 121454 0.66 0.976179
Target:  5'- -cAGCGCGCGGCCuACGCguacauuagaGAGGc---- -3'
miRNA:   3'- caUUGCGCGCUGG-UGCG----------CUCCaaacc -5'
24389 3' -53.2 NC_005264.1 + 74238 0.67 0.970814
Target:  5'- cGUAGCGCGCuGGCCGCGCuccagacacGGcGGUagaggcgGGg -3'
miRNA:   3'- -CAUUGCGCG-CUGGUGCG---------CU-CCAaa-----CC- -5'
24389 3' -53.2 NC_005264.1 + 33944 0.67 0.961223
Target:  5'- cGUGGCGCGCcggGACCGCGCccgauaGGGGccgcUUGa -3'
miRNA:   3'- -CAUUGCGCG---CUGGUGCG------CUCCa---AACc -5'
24389 3' -53.2 NC_005264.1 + 77022 0.67 0.957591
Target:  5'- aGUGACGCGCGugUcgcuaACGCuAGGaagGGu -3'
miRNA:   3'- -CAUUGCGCGCugG-----UGCGcUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 113517 0.66 0.976179
Target:  5'- -gAGCGCGaacaGCCGCGgGAGGUccUUGu -3'
miRNA:   3'- caUUGCGCgc--UGGUGCgCUCCA--AACc -5'
24389 3' -53.2 NC_005264.1 + 147782 0.66 0.973595
Target:  5'- cGUGGacCGCGCGaACUGCGCGAcggaGGUgaGGu -3'
miRNA:   3'- -CAUU--GCGCGC-UGGUGCGCU----CCAaaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.