miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24389 5' -52.5 NC_005264.1 + 161800 0.67 0.961351
Target:  5'- gACCCGGGuGGCC-AGUuacGGCCGGCGGa- -3'
miRNA:   3'- -UGGGUCU-UUGGaUUA---CCGGCUGCUgu -5'
24389 5' -52.5 NC_005264.1 + 158386 0.67 0.96774
Target:  5'- cGCCCAGAAucgcgcaGCCaGA-GGCCucagacgauGACGACGu -3'
miRNA:   3'- -UGGGUCUU-------UGGaUUaCCGG---------CUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 156828 0.73 0.76839
Target:  5'- cCCCGGAGccuccccGCCcgucggGGCCGACGACu -3'
miRNA:   3'- uGGGUCUU-------UGGauua--CCGGCUGCUGu -5'
24389 5' -52.5 NC_005264.1 + 156204 0.7 0.880357
Target:  5'- uUCCGGAcauguGCCcccgcGUGGCCGugGGCAu -3'
miRNA:   3'- uGGGUCUu----UGGau---UACCGGCugCUGU- -5'
24389 5' -52.5 NC_005264.1 + 155425 0.71 0.857663
Target:  5'- cACCCGGcgcacGAACC-AAUGGaCGACGGCGc -3'
miRNA:   3'- -UGGGUC-----UUUGGaUUACCgGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 147552 0.66 0.976494
Target:  5'- uCCCGcGgcGCgaAGUGGCCGcCGACGu -3'
miRNA:   3'- uGGGU-CuuUGgaUUACCGGCuGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 146062 0.72 0.806727
Target:  5'- gGCCaCAGAGACC-----GCCGGCGACGa -3'
miRNA:   3'- -UGG-GUCUUUGGauuacCGGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 144259 0.66 0.983171
Target:  5'- gGCCUGGcucgcuGCCUug-GGCCGGCGGa- -3'
miRNA:   3'- -UGGGUCuu----UGGAuuaCCGGCUGCUgu -5'
24389 5' -52.5 NC_005264.1 + 135536 0.68 0.935608
Target:  5'- uGCUCGGGGACCUAG-GGaCCG-CGAUg -3'
miRNA:   3'- -UGGGUCUUUGGAUUaCC-GGCuGCUGu -5'
24389 5' -52.5 NC_005264.1 + 132161 0.69 0.929931
Target:  5'- cACCUccgacgaGGAGuuCgUAGUGGUCGACGACGa -3'
miRNA:   3'- -UGGG-------UCUUu-GgAUUACCGGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 130905 0.66 0.976494
Target:  5'- aGCUCAGAgccgAGCCgcgagGGCCGugGGa- -3'
miRNA:   3'- -UGGGUCU----UUGGauua-CCGGCugCUgu -5'
24389 5' -52.5 NC_005264.1 + 130506 0.69 0.913514
Target:  5'- uACUCAGGAACUUAAagacGCCGGCGAg- -3'
miRNA:   3'- -UGGGUCUUUGGAUUac--CGGCUGCUgu -5'
24389 5' -52.5 NC_005264.1 + 125613 0.69 0.925061
Target:  5'- cCCCAGggGCCgacaGGUCaACGGCGa -3'
miRNA:   3'- uGGGUCuuUGGauuaCCGGcUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 123296 0.71 0.865449
Target:  5'- cGCgCGGGAACCgcg-GGgCGGCGGCAg -3'
miRNA:   3'- -UGgGUCUUUGGauuaCCgGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 123046 0.71 0.841458
Target:  5'- -aCCAGggGCUUGGcgGGCCGAUG-CAu -3'
miRNA:   3'- ugGGUCuuUGGAUUa-CCGGCUGCuGU- -5'
24389 5' -52.5 NC_005264.1 + 122656 0.72 0.788334
Target:  5'- uACCCAuacACCUAcuuUGGCCuGGCGACAg -3'
miRNA:   3'- -UGGGUcuuUGGAUu--ACCGG-CUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 121394 0.66 0.976494
Target:  5'- aACCCuGgcACCgAGUGGCCGuCGcccGCAg -3'
miRNA:   3'- -UGGGuCuuUGGaUUACCGGCuGC---UGU- -5'
24389 5' -52.5 NC_005264.1 + 119252 0.97 0.037731
Target:  5'- uACCCAaGAACCUAAUGGCCGACGACAc -3'
miRNA:   3'- -UGGGUcUUUGGAUUACCGGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 113246 0.67 0.971076
Target:  5'- cCCCGucguCCUGGUcGCCGGCGGCGu -3'
miRNA:   3'- uGGGUcuuuGGAUUAcCGGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 109383 0.72 0.778913
Target:  5'- gGCCgucGGAACCUGuucuUGGCCGACGuGCAa -3'
miRNA:   3'- -UGGgu-CUUUGGAUu---ACCGGCUGC-UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.