miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24392 3' -58.1 NC_005264.1 + 146667 0.66 0.834105
Target:  5'- cGCGAccGACCUccGCGCAGGGC-GGCa -3'
miRNA:   3'- -UGUUc-CUGGGauCGCGUCUCGaCCGc -5'
24392 3' -58.1 NC_005264.1 + 123698 0.66 0.834105
Target:  5'- uCAGGGAauaCCU-GCGuCGGGGCgagUGGCGc -3'
miRNA:   3'- uGUUCCUg--GGAuCGC-GUCUCG---ACCGC- -5'
24392 3' -58.1 NC_005264.1 + 4671 0.66 0.834105
Target:  5'- uCAGGGAauaCCU-GCGuCGGGGCgagUGGCGc -3'
miRNA:   3'- uGUUCCUg--GGAuCGC-GUCUCG---ACCGC- -5'
24392 3' -58.1 NC_005264.1 + 36640 0.66 0.834105
Target:  5'- gACGGGGaACCCgacccguGCGCGGAuggacCUGGCc -3'
miRNA:   3'- -UGUUCC-UGGGau-----CGCGUCUc----GACCGc -5'
24392 3' -58.1 NC_005264.1 + 42294 0.66 0.834105
Target:  5'- cGCGGGGcCCCaaaaaacGGCGCAGccAGC-GGCGu -3'
miRNA:   3'- -UGUUCCuGGGa------UCGCGUC--UCGaCCGC- -5'
24392 3' -58.1 NC_005264.1 + 77322 0.66 0.834105
Target:  5'- gGCGAGuugguucauuGCCCUcGCGCGGgagaAGUUGGCGa -3'
miRNA:   3'- -UGUUCc---------UGGGAuCGCGUC----UCGACCGC- -5'
24392 3' -58.1 NC_005264.1 + 161321 0.66 0.834105
Target:  5'- cGCGGGGcCCCaaaaaacGGCGCAGccAGC-GGCGu -3'
miRNA:   3'- -UGUUCCuGGGa------UCGCGUC--UCGaCCGC- -5'
24392 3' -58.1 NC_005264.1 + 110117 0.66 0.825784
Target:  5'- gACAGGGGCCgagAGcCGCcgcgcuuuugGGGGCgGGCGg -3'
miRNA:   3'- -UGUUCCUGGga-UC-GCG----------UCUCGaCCGC- -5'
24392 3' -58.1 NC_005264.1 + 71540 0.66 0.825784
Target:  5'- uACGGGcaucGCCCUGGUGaCAGAGUUgaacGGCGc -3'
miRNA:   3'- -UGUUCc---UGGGAUCGC-GUCUCGA----CCGC- -5'
24392 3' -58.1 NC_005264.1 + 95144 0.66 0.820707
Target:  5'- uACGGacGGCCCgGGCGCAGAGCUauucugccccugcaaGGUGc -3'
miRNA:   3'- -UGUUc-CUGGGaUCGCGUCUCGA---------------CCGC- -5'
24392 3' -58.1 NC_005264.1 + 37781 0.66 0.817289
Target:  5'- uCAAGGACUCgaggcgAGCgGCGGAGaagaGGCGc -3'
miRNA:   3'- uGUUCCUGGGa-----UCG-CGUCUCga--CCGC- -5'
24392 3' -58.1 NC_005264.1 + 124314 0.66 0.817289
Target:  5'- gGCGGGGcggcggcugACCCgUGGgGCGGGcGaCUGGCGg -3'
miRNA:   3'- -UGUUCC---------UGGG-AUCgCGUCU-C-GACCGC- -5'
24392 3' -58.1 NC_005264.1 + 5287 0.66 0.817289
Target:  5'- gGCGGGGcggcggcugACCCgUGGgGCGGGcGaCUGGCGg -3'
miRNA:   3'- -UGUUCC---------UGGG-AUCgCGUCU-C-GACCGC- -5'
24392 3' -58.1 NC_005264.1 + 75152 0.66 0.817289
Target:  5'- cACGAGGGCCac-GC-CAGAGUUGuGCa -3'
miRNA:   3'- -UGUUCCUGGgauCGcGUCUCGAC-CGc -5'
24392 3' -58.1 NC_005264.1 + 125693 0.66 0.808628
Target:  5'- gGCAGaGAUCCUGGCGCcAGcAGCgaGGCc -3'
miRNA:   3'- -UGUUcCUGGGAUCGCG-UC-UCGa-CCGc -5'
24392 3' -58.1 NC_005264.1 + 93845 0.66 0.808628
Target:  5'- gACAGGGccgcggGCCaCUGGCccGCuaAGCUGGCGa -3'
miRNA:   3'- -UGUUCC------UGG-GAUCG--CGucUCGACCGC- -5'
24392 3' -58.1 NC_005264.1 + 6666 0.66 0.808628
Target:  5'- gGCAGaGAUCCUGGCGCcAGcAGCgaGGCc -3'
miRNA:   3'- -UGUUcCUGGGAUCGCG-UC-UCGa-CCGc -5'
24392 3' -58.1 NC_005264.1 + 26627 0.66 0.807753
Target:  5'- -gAAGGuuaaccuuauagaACCUUAGCGCGGcGCcGGCGc -3'
miRNA:   3'- ugUUCC-------------UGGGAUCGCGUCuCGaCCGC- -5'
24392 3' -58.1 NC_005264.1 + 155241 0.66 0.807753
Target:  5'- gGCGGGGGaugaggaagcaucUCCgcagcGGCGCGGGGUaGGCGg -3'
miRNA:   3'- -UGUUCCU-------------GGGa----UCGCGUCUCGaCCGC- -5'
24392 3' -58.1 NC_005264.1 + 3687 0.66 0.79981
Target:  5'- ---cGGGgCCUGGCGCGGAaagGGCGc -3'
miRNA:   3'- uguuCCUgGGAUCGCGUCUcgaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.