miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24396 3' -55.6 NC_005264.1 + 162395 0.67 0.902157
Target:  5'- --cGACCGCGCauagGUACGA-GAcGCUAg -3'
miRNA:   3'- ugaCUGGCGCGa---CAUGCUgCUuCGGU- -5'
24396 3' -55.6 NC_005264.1 + 162210 0.68 0.827941
Target:  5'- uCU-AUCGCGCUGccUGCGACGcGGGCCGg -3'
miRNA:   3'- uGAcUGGCGCGAC--AUGCUGC-UUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 159303 0.67 0.889042
Target:  5'- uGCUGgacgccGCCGCGUcgcgGUuCGACGAGGCgGa -3'
miRNA:   3'- -UGAC------UGGCGCGa---CAuGCUGCUUCGgU- -5'
24396 3' -55.6 NC_005264.1 + 158521 0.7 0.755556
Target:  5'- gGCaGGCCuGCGCUGUG-GugGAcGCCAg -3'
miRNA:   3'- -UGaCUGG-CGCGACAUgCugCUuCGGU- -5'
24396 3' -55.6 NC_005264.1 + 157777 0.66 0.908367
Target:  5'- gGCUGGCCGC-CU-UGCGACcccuGCCAg -3'
miRNA:   3'- -UGACUGGCGcGAcAUGCUGcuu-CGGU- -5'
24396 3' -55.6 NC_005264.1 + 157368 0.74 0.514497
Target:  5'- cCUGGCCGUgauGCUGgGCGGCGggGCg- -3'
miRNA:   3'- uGACUGGCG---CGACaUGCUGCuuCGgu -5'
24396 3' -55.6 NC_005264.1 + 156752 0.66 0.908367
Target:  5'- uCUG-CCGcCGCU--ACGACGcGAGCCAa -3'
miRNA:   3'- uGACuGGC-GCGAcaUGCUGC-UUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 156511 0.71 0.716463
Target:  5'- aACgagGACUGCG-UGUACGccacGCGAAGCCu -3'
miRNA:   3'- -UGa--CUGGCGCgACAUGC----UGCUUCGGu -5'
24396 3' -55.6 NC_005264.1 + 154055 0.69 0.774485
Target:  5'- cGCUGGCCGUcCUGgcCGACGcccGCCGu -3'
miRNA:   3'- -UGACUGGCGcGACauGCUGCuu-CGGU- -5'
24396 3' -55.6 NC_005264.1 + 153358 0.68 0.852378
Target:  5'- gGCUGACU-CGCUG-ACG-CGAGGUCGg -3'
miRNA:   3'- -UGACUGGcGCGACaUGCuGCUUCGGU- -5'
24396 3' -55.6 NC_005264.1 + 149243 0.67 0.882143
Target:  5'- cGCUGGCCggugugGCGCUGgg-GcCGAAGCCc -3'
miRNA:   3'- -UGACUGG------CGCGACaugCuGCUUCGGu -5'
24396 3' -55.6 NC_005264.1 + 148500 0.73 0.564125
Target:  5'- cGCUGGUCGCGUUG-GCGGCGAGcGCCGc -3'
miRNA:   3'- -UGACUGGCGCGACaUGCUGCUU-CGGU- -5'
24396 3' -55.6 NC_005264.1 + 147785 0.67 0.902157
Target:  5'- --gGACCGCGCgaacUGcGCGACGGAGgUg -3'
miRNA:   3'- ugaCUGGCGCG----ACaUGCUGCUUCgGu -5'
24396 3' -55.6 NC_005264.1 + 145809 0.79 0.302633
Target:  5'- --cGGCCGCGCUGcugGCGACGAucGCCGc -3'
miRNA:   3'- ugaCUGGCGCGACa--UGCUGCUu-CGGU- -5'
24396 3' -55.6 NC_005264.1 + 142768 0.68 0.836275
Target:  5'- aGCUGACgGUGCUugcucgcUACG-CGggGCCGc -3'
miRNA:   3'- -UGACUGgCGCGAc------AUGCuGCuuCGGU- -5'
24396 3' -55.6 NC_005264.1 + 138777 0.71 0.696448
Target:  5'- cCUGGCCGUGCUGUugGcUGuguccGCCAu -3'
miRNA:   3'- uGACUGGCGCGACAugCuGCuu---CGGU- -5'
24396 3' -55.6 NC_005264.1 + 136455 0.69 0.774485
Target:  5'- cGCUGagGCCGCGCUcagaGACGgcGCCGc -3'
miRNA:   3'- -UGAC--UGGCGCGAcaugCUGCuuCGGU- -5'
24396 3' -55.6 NC_005264.1 + 129601 0.7 0.745923
Target:  5'- cGCUG-CgGCGCg--GCGGCGAAGCUu -3'
miRNA:   3'- -UGACuGgCGCGacaUGCUGCUUCGGu -5'
24396 3' -55.6 NC_005264.1 + 129511 0.66 0.930835
Target:  5'- uUUGGCgGCGCcGgagGCGACGGAaCCAc -3'
miRNA:   3'- uGACUGgCGCGaCa--UGCUGCUUcGGU- -5'
24396 3' -55.6 NC_005264.1 + 123925 0.66 0.935856
Target:  5'- --gGACCGCGgaGgcgaGCGACGAAGa-- -3'
miRNA:   3'- ugaCUGGCGCgaCa---UGCUGCUUCggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.