miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24396 5' -59.4 NC_005264.1 + 109975 0.66 0.799324
Target:  5'- ---aGGUaCcgCGAGCCUGcCCGCUCGGg -3'
miRNA:   3'- aaacCCAaGa-GCUCGGGC-GGUGGGCC- -5'
24396 5' -59.4 NC_005264.1 + 69406 0.66 0.799324
Target:  5'- --cGGGUaggCGcGCCUGCCGCCguCGGa -3'
miRNA:   3'- aaaCCCAagaGCuCGGGCGGUGG--GCC- -5'
24396 5' -59.4 NC_005264.1 + 3441 0.66 0.790524
Target:  5'- -----cUUCUCagGGGUCCGCCGCCCGu -3'
miRNA:   3'- aaacccAAGAG--CUCGGGCGGUGGGCc -5'
24396 5' -59.4 NC_005264.1 + 149864 0.66 0.787857
Target:  5'- --cGGGcUCgCGucgucgucggcggcGGCgCGCCGCCCGGu -3'
miRNA:   3'- aaaCCCaAGaGC--------------UCGgGCGGUGGGCC- -5'
24396 5' -59.4 NC_005264.1 + 30838 0.66 0.787857
Target:  5'- --cGGGcUCgCGucgucgucggcggcGGCgCGCCGCCCGGu -3'
miRNA:   3'- aaaCCCaAGaGC--------------UCGgGCGGUGGGCC- -5'
24396 5' -59.4 NC_005264.1 + 116362 0.66 0.781588
Target:  5'- --aGGGUcuUCUguaGGGCCUGCCGuCgCGGg -3'
miRNA:   3'- aaaCCCA--AGAg--CUCGGGCGGU-GgGCC- -5'
24396 5' -59.4 NC_005264.1 + 119438 0.66 0.772526
Target:  5'- --cGGGcgaUCUCGcuGCCCagGCCGCCCa- -3'
miRNA:   3'- aaaCCCa--AGAGCu-CGGG--CGGUGGGcc -5'
24396 5' -59.4 NC_005264.1 + 44882 0.66 0.763345
Target:  5'- -cUGGGgaggCGGGCCCGUCGucgUCUGGg -3'
miRNA:   3'- aaACCCaagaGCUCGGGCGGU---GGGCC- -5'
24396 5' -59.4 NC_005264.1 + 118357 0.67 0.754053
Target:  5'- aUUGGGUcUCgacgUCGAuggucacgaacGCCUGCCGCuuGGu -3'
miRNA:   3'- aAACCCA-AG----AGCU-----------CGGGCGGUGggCC- -5'
24396 5' -59.4 NC_005264.1 + 61421 0.67 0.754053
Target:  5'- --cGGG-UCUCGuaugcuuucggcGGCCCGCUcCUCGGc -3'
miRNA:   3'- aaaCCCaAGAGC------------UCGGGCGGuGGGCC- -5'
24396 5' -59.4 NC_005264.1 + 67945 0.67 0.725601
Target:  5'- --gGGGUUCcCGGcGCCUGCgGCUCGa -3'
miRNA:   3'- aaaCCCAAGaGCU-CGGGCGgUGGGCc -5'
24396 5' -59.4 NC_005264.1 + 101613 0.67 0.715953
Target:  5'- -gUGGcguaGUUCUCuGGGCUCuuGCCGCCCGa -3'
miRNA:   3'- aaACC----CAAGAG-CUCGGG--CGGUGGGCc -5'
24396 5' -59.4 NC_005264.1 + 106 0.67 0.706237
Target:  5'- --cGGGccgCUCGAGuuuccuuuuCCCGCUcCCCGGc -3'
miRNA:   3'- aaaCCCaa-GAGCUC---------GGGCGGuGGGCC- -5'
24396 5' -59.4 NC_005264.1 + 119133 0.67 0.706237
Target:  5'- --cGGGccgCUCGAGuuuccuuuuCCCGCUcCCCGGc -3'
miRNA:   3'- aaaCCCaa-GAGCUC---------GGGCGGuGGGCC- -5'
24396 5' -59.4 NC_005264.1 + 83431 0.67 0.706237
Target:  5'- -cUGGGUUC-CGccgcGGCCuCGCCacGCCCGcGg -3'
miRNA:   3'- aaACCCAAGaGC----UCGG-GCGG--UGGGC-C- -5'
24396 5' -59.4 NC_005264.1 + 62554 0.68 0.676766
Target:  5'- ---cGGUUCcagcaagcCGAGCCCGCUGCgCGGa -3'
miRNA:   3'- aaacCCAAGa-------GCUCGGGCGGUGgGCC- -5'
24396 5' -59.4 NC_005264.1 + 57256 0.68 0.676766
Target:  5'- cUUGaGGcgCUCGAGCCCuaGCC-CgCGGg -3'
miRNA:   3'- aAAC-CCaaGAGCUCGGG--CGGuGgGCC- -5'
24396 5' -59.4 NC_005264.1 + 26949 0.68 0.666862
Target:  5'- --aGGGUaCUCGaAGUCCGCCgggagGCCCa- -3'
miRNA:   3'- aaaCCCAaGAGC-UCGGGCGG-----UGGGcc -5'
24396 5' -59.4 NC_005264.1 + 82851 0.68 0.656932
Target:  5'- --aGGGUUaCUCGGccGCCCGCcCAgCCGu -3'
miRNA:   3'- aaaCCCAA-GAGCU--CGGGCG-GUgGGCc -5'
24396 5' -59.4 NC_005264.1 + 102257 0.68 0.656932
Target:  5'- --aGGGg-CUCGAGaaCGCCGCCgCGGu -3'
miRNA:   3'- aaaCCCaaGAGCUCggGCGGUGG-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.