miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24414 3' -60.2 NC_005264.1 + 125821 0.66 0.721244
Target:  5'- uGCGGCGGcucagagggGACGGuCAGGguguUGCCGgAGGc -3'
miRNA:   3'- -CGCCGCC---------UUGCC-GUCU----GCGGCgUCUa -5'
24414 3' -60.2 NC_005264.1 + 86429 0.66 0.729876
Target:  5'- cGUGGCGcAcccaaucgcgcACGGCauaauggAGACGCUGCAGGa -3'
miRNA:   3'- -CGCCGCcU-----------UGCCG-------UCUGCGGCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 60899 0.66 0.721244
Target:  5'- cGCGGUGG---GGCcGACGCCGcCAGu- -3'
miRNA:   3'- -CGCCGCCuugCCGuCUGCGGC-GUCua -5'
24414 3' -60.2 NC_005264.1 + 149421 0.66 0.711584
Target:  5'- uCGGCGG--CGGCGGucgcGCGCCgguGCGGAg -3'
miRNA:   3'- cGCCGCCuuGCCGUC----UGCGG---CGUCUa -5'
24414 3' -60.2 NC_005264.1 + 54213 0.66 0.715456
Target:  5'- cGCGGgGGAuacggacgGCGGCcggugcguucacgcuAGgcugcuagaGCGCCGCAGGg -3'
miRNA:   3'- -CGCCgCCU--------UGCCG---------------UC---------UGCGGCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 4445 0.66 0.759076
Target:  5'- gGCGGCGGGcauauACGGCucccauAGGCGaggcuaaGCGGAa -3'
miRNA:   3'- -CGCCGCCU-----UGCCG------UCUGCgg-----CGUCUa -5'
24414 3' -60.2 NC_005264.1 + 151414 0.66 0.749756
Target:  5'- cCGGCGGc-CGGCGucCGCCGCGa-- -3'
miRNA:   3'- cGCCGCCuuGCCGUcuGCGGCGUcua -5'
24414 3' -60.2 NC_005264.1 + 11629 0.66 0.759076
Target:  5'- cGUGucGUGGAACGGUAucaGCGCgGCAGGg -3'
miRNA:   3'- -CGC--CGCCUUGCCGUc--UGCGgCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 124835 0.66 0.759076
Target:  5'- aCGGCGuucaauaguccGGCGGCGGugGCCGCc--- -3'
miRNA:   3'- cGCCGCc----------UUGCCGUCugCGGCGucua -5'
24414 3' -60.2 NC_005264.1 + 131013 0.66 0.734644
Target:  5'- cGCGcGCGGcACGGCAGAguacgcgucacgaccUGCgGCGGc- -3'
miRNA:   3'- -CGC-CGCCuUGCCGUCU---------------GCGgCGUCua -5'
24414 3' -60.2 NC_005264.1 + 142503 0.66 0.721244
Target:  5'- uGCGcGCGGAACGGCA-ACG-UGCAaGAg -3'
miRNA:   3'- -CGC-CGCCUUGCCGUcUGCgGCGU-CUa -5'
24414 3' -60.2 NC_005264.1 + 137287 0.66 0.759076
Target:  5'- cGCGGCGuuGGCGGCgacgcGGGCGUacggcacccauCGCAGAa -3'
miRNA:   3'- -CGCCGCc-UUGCCG-----UCUGCG-----------GCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 138417 0.66 0.740338
Target:  5'- aGCGGCGaGAACGuGCuuuGCGUCGCGc-- -3'
miRNA:   3'- -CGCCGC-CUUGC-CGuc-UGCGGCGUcua -5'
24414 3' -60.2 NC_005264.1 + 70669 0.66 0.711584
Target:  5'- cGCGGCGccgcCGGCAGgcaauuuuuACGCcCGCGGGc -3'
miRNA:   3'- -CGCCGCcuu-GCCGUC---------UGCG-GCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 5809 0.66 0.759076
Target:  5'- aCGGCGuucaauaguccGGCGGCGGugGCCGCc--- -3'
miRNA:   3'- cGCCGCc----------UUGCCGUCugCGGCGucua -5'
24414 3' -60.2 NC_005264.1 + 100205 0.66 0.711584
Target:  5'- uGCuGCGcuuGGACGGCGGGCGagaagaccUCGCAGAa -3'
miRNA:   3'- -CGcCGC---CUUGCCGUCUGC--------GGCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 125492 0.66 0.711584
Target:  5'- uCGGCGGcGCGGCGaACGUCGgGGu- -3'
miRNA:   3'- cGCCGCCuUGCCGUcUGCGGCgUCua -5'
24414 3' -60.2 NC_005264.1 + 57484 0.66 0.711584
Target:  5'- gGCGGCGG--CGGCGaagaugcuGGCGCgCGCGGc- -3'
miRNA:   3'- -CGCCGCCuuGCCGU--------CUGCG-GCGUCua -5'
24414 3' -60.2 NC_005264.1 + 32548 0.66 0.759076
Target:  5'- gGCuGUGGAuguggcugccGCGGUAGcCGCCGCAa-- -3'
miRNA:   3'- -CGcCGCCU----------UGCCGUCuGCGGCGUcua -5'
24414 3' -60.2 NC_005264.1 + 41632 0.66 0.749756
Target:  5'- aGCGGCuGGccagauGCGGCAG-CGCgGcCGGGUc -3'
miRNA:   3'- -CGCCG-CCu-----UGCCGUCuGCGgC-GUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.