miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24414 3' -60.2 NC_005264.1 + 252 0.69 0.553722
Target:  5'- uGCGGCGGcGCu--GGACGCgGCAGAa -3'
miRNA:   3'- -CGCCGCCuUGccgUCUGCGgCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 1014 0.7 0.477914
Target:  5'- uGUGGUGGGGgGGCAGGgGCCGUu--- -3'
miRNA:   3'- -CGCCGCCUUgCCGUCUgCGGCGucua -5'
24414 3' -60.2 NC_005264.1 + 3497 0.67 0.651583
Target:  5'- cGCGGCGGGG-GGCAGGggauccuCGCCGUc--- -3'
miRNA:   3'- -CGCCGCCUUgCCGUCU-------GCGGCGucua -5'
24414 3' -60.2 NC_005264.1 + 3609 0.75 0.268944
Target:  5'- cGUGGUGG-ACGGUGGGCGCUGUGGGc -3'
miRNA:   3'- -CGCCGCCuUGCCGUCUGCGGCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 3830 0.69 0.573281
Target:  5'- -gGGCGGGGCcGCAGgaggaaauACGaCCGCAGAc -3'
miRNA:   3'- cgCCGCCUUGcCGUC--------UGC-GGCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 4093 0.68 0.622757
Target:  5'- gGCGGCGucGCGGCAcGACgggGCCGaGGGUg -3'
miRNA:   3'- -CGCCGCcuUGCCGU-CUG---CGGCgUCUA- -5'
24414 3' -60.2 NC_005264.1 + 4445 0.66 0.759076
Target:  5'- gGCGGCGGGcauauACGGCucccauAGGCGaggcuaaGCGGAa -3'
miRNA:   3'- -CGCCGCCU-----UGCCG------UCUGCgg-----CGUCUa -5'
24414 3' -60.2 NC_005264.1 + 4499 0.7 0.515254
Target:  5'- cGCGaGCGGAGgGGggacuGGGCGuCCGCGGAg -3'
miRNA:   3'- -CGC-CGCCUUgCCg----UCUGC-GGCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 5285 0.73 0.351628
Target:  5'- aCGGCGGGGCGGCGgcuGAC-CCGUGGGg -3'
miRNA:   3'- cGCCGCCUUGCCGU---CUGcGGCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 5809 0.66 0.759076
Target:  5'- aCGGCGuucaauaguccGGCGGCGGugGCCGCc--- -3'
miRNA:   3'- cGCCGCc----------UUGCCGUCugCGGCGucua -5'
24414 3' -60.2 NC_005264.1 + 6465 0.66 0.711584
Target:  5'- uCGGCGGcGCGGCGaACGUCGgGGu- -3'
miRNA:   3'- cGCCGCCuUGCCGUcUGCGGCgUCua -5'
24414 3' -60.2 NC_005264.1 + 6795 0.66 0.721244
Target:  5'- uGCGGCGGcucagagggGACGGuCAGGguguUGCCGgAGGc -3'
miRNA:   3'- -CGCCGCC---------UUGCC-GUCU----GCGGCgUCUa -5'
24414 3' -60.2 NC_005264.1 + 8775 0.69 0.534365
Target:  5'- -aGGC-GAACGGCGGGCGUCGgcCAGGa -3'
miRNA:   3'- cgCCGcCUUGCCGUCUGCGGC--GUCUa -5'
24414 3' -60.2 NC_005264.1 + 11376 0.67 0.662495
Target:  5'- uGCGGaaGAacGCGGCc-GCGUCGCGGAUg -3'
miRNA:   3'- -CGCCgcCU--UGCCGucUGCGGCGUCUA- -5'
24414 3' -60.2 NC_005264.1 + 11629 0.66 0.759076
Target:  5'- cGUGucGUGGAACGGUAucaGCGCgGCAGGg -3'
miRNA:   3'- -CGC--CGCCUUGCCGUc--UGCGgCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 11767 0.69 0.563478
Target:  5'- cGCGGCGaAACGGUuGACGCucuCGUAGGc -3'
miRNA:   3'- -CGCCGCcUUGCCGuCUGCG---GCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 11986 0.66 0.734644
Target:  5'- cGCGcGCGGcACGGCAGAguacgcgucacgaccUGCgGCGGc- -3'
miRNA:   3'- -CGC-CGCCuUGCCGUCU---------------GCGgCGUCua -5'
24414 3' -60.2 NC_005264.1 + 12539 0.67 0.692082
Target:  5'- cCGGUaGGAGCGGgGGGCguucGCCGCgaAGAUa -3'
miRNA:   3'- cGCCG-CCUUGCCgUCUG----CGGCG--UCUA- -5'
24414 3' -60.2 NC_005264.1 + 13613 0.7 0.487128
Target:  5'- cGCGGuCGGGACgcgGGCAGGgGCgGCGGu- -3'
miRNA:   3'- -CGCC-GCCUUG---CCGUCUgCGgCGUCua -5'
24414 3' -60.2 NC_005264.1 + 19413 0.7 0.505803
Target:  5'- aUGGgGGAGgcgaggcgcCGGguGugGCCGCGGGg -3'
miRNA:   3'- cGCCgCCUU---------GCCguCugCGGCGUCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.