miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24414 3' -60.2 NC_005264.1 + 19413 0.7 0.505803
Target:  5'- aUGGgGGAGgcgaggcgcCGGguGugGCCGCGGGg -3'
miRNA:   3'- cGCCgCCUU---------GCCguCugCGGCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 97612 0.72 0.374929
Target:  5'- cGCGGCGGcuACGGCucAGuauucuacaGCCGCAGAg -3'
miRNA:   3'- -CGCCGCCu-UGCCG--UCug-------CGGCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 150807 0.72 0.391033
Target:  5'- cGCgGGCGcuucgccuaaGGGCGGCGGucgcCGCCGCAGGUc -3'
miRNA:   3'- -CG-CCGC----------CUUGCCGUCu---GCGGCGUCUA- -5'
24414 3' -60.2 NC_005264.1 + 118059 0.72 0.407581
Target:  5'- cGCGGCGu--CGGCAacGAuCGCCGCGGGc -3'
miRNA:   3'- -CGCCGCcuuGCCGU--CU-GCGGCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 1014 0.7 0.477914
Target:  5'- uGUGGUGGGGgGGCAGGgGCCGUu--- -3'
miRNA:   3'- -CGCCGCCUUgCCGUCUgCGGCGucua -5'
24414 3' -60.2 NC_005264.1 + 146752 0.7 0.477914
Target:  5'- gGCGGCGGAccCGGCAacagcaaGCGCCGCGcGGc -3'
miRNA:   3'- -CGCCGCCUu-GCCGUc------UGCGGCGU-CUa -5'
24414 3' -60.2 NC_005264.1 + 132640 0.7 0.487128
Target:  5'- cGCGGuCGGGACgcgGGCAGGgGCgGCGGu- -3'
miRNA:   3'- -CGCC-GCCUUG---CCGUCUgCGgCGUCua -5'
24414 3' -60.2 NC_005264.1 + 147585 0.7 0.487128
Target:  5'- aCGG-GGAACGGUcgcAGGCGCaUGCAGAa -3'
miRNA:   3'- cGCCgCCUUGCCG---UCUGCG-GCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 133493 0.7 0.496426
Target:  5'- cCGGCGuaccCGGCAGACgucguaGCCGCAGGa -3'
miRNA:   3'- cGCCGCcuu-GCCGUCUG------CGGCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 87527 0.73 0.359279
Target:  5'- cUGGCGc-GCGGCAGAUGCUGCAGc- -3'
miRNA:   3'- cGCCGCcuUGCCGUCUGCGGCGUCua -5'
24414 3' -60.2 NC_005264.1 + 91902 0.73 0.351628
Target:  5'- cGCGGCaGcGAugGGCGGGCGCgGCGa-- -3'
miRNA:   3'- -CGCCG-C-CUugCCGUCUGCGgCGUcua -5'
24414 3' -60.2 NC_005264.1 + 124312 0.73 0.351628
Target:  5'- aCGGCGGGGCGGCGgcuGAC-CCGUGGGg -3'
miRNA:   3'- cGCCGCCUUGCCGU---CUGcGGCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 157409 0.76 0.223027
Target:  5'- cCGGCGaGAGCGGC-GACGCCGagaCAGAUg -3'
miRNA:   3'- cGCCGC-CUUGCCGuCUGCGGC---GUCUA- -5'
24414 3' -60.2 NC_005264.1 + 3609 0.75 0.268944
Target:  5'- cGUGGUGG-ACGGUGGGCGCUGUGGGc -3'
miRNA:   3'- -CGCCGCCuUGCCGUCUGCGGCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 77800 0.75 0.275192
Target:  5'- cGCGGCGcaGACGGCAuuGACGgCGCGGAc -3'
miRNA:   3'- -CGCCGCc-UUGCCGU--CUGCgGCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 83733 0.75 0.277089
Target:  5'- cGCGGCGGcagagaugcccucuGCGGCAGAcagcccuCGCCGguGAg -3'
miRNA:   3'- -CGCCGCCu-------------UGCCGUCU-------GCGGCguCUa -5'
24414 3' -60.2 NC_005264.1 + 59982 0.74 0.293966
Target:  5'- cGCGGCGGuggccgcgagcgaGACGGCcgcGugGCCGCGGc- -3'
miRNA:   3'- -CGCCGCC-------------UUGCCGu--CugCGGCGUCua -5'
24414 3' -60.2 NC_005264.1 + 133194 0.74 0.314423
Target:  5'- cGCGGCGGAccgACuGCGGgccucguucguccGCGCCGUAGAg -3'
miRNA:   3'- -CGCCGCCU---UGcCGUC-------------UGCGGCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 149455 0.73 0.335939
Target:  5'- uGCGGCGGAGgaggucuCGGgGGA-GCCGCGGGc -3'
miRNA:   3'- -CGCCGCCUU-------GCCgUCUgCGGCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 37797 0.73 0.351628
Target:  5'- aGCGGCGGAGaagaGGC--GCGCCGCcGAc -3'
miRNA:   3'- -CGCCGCCUUg---CCGucUGCGGCGuCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.