miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24414 3' -60.2 NC_005264.1 + 103548 1.07 0.001609
Target:  5'- uGCGGCGGAACGGCAGACGCCGCAGAUg -3'
miRNA:   3'- -CGCCGCCUUGCCGUCUGCGGCGUCUA- -5'
24414 3' -60.2 NC_005264.1 + 140549 0.79 0.154846
Target:  5'- cGCGGCuGGGAUGGCAGaaggGCGCgCGCGGGUu -3'
miRNA:   3'- -CGCCG-CCUUGCCGUC----UGCG-GCGUCUA- -5'
24414 3' -60.2 NC_005264.1 + 75090 0.77 0.202672
Target:  5'- cGCGGCGcuGCGGCAGGCGCCgGCGccGAg -3'
miRNA:   3'- -CGCCGCcuUGCCGUCUGCGG-CGU--CUa -5'
24414 3' -60.2 NC_005264.1 + 157409 0.76 0.223027
Target:  5'- cCGGCGaGAGCGGC-GACGCCGagaCAGAUg -3'
miRNA:   3'- cGCCGC-CUUGCCGuCUGCGGC---GUCUA- -5'
24414 3' -60.2 NC_005264.1 + 38382 0.76 0.223027
Target:  5'- cCGGCGaGAGCGGC-GACGCCGagaCAGAUg -3'
miRNA:   3'- cGCCGC-CUUGCCGuCUGCGGC---GUCUA- -5'
24414 3' -60.2 NC_005264.1 + 3609 0.75 0.268944
Target:  5'- cGUGGUGG-ACGGUGGGCGCUGUGGGc -3'
miRNA:   3'- -CGCCGCCuUGCCGUCUGCGGCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 77800 0.75 0.275192
Target:  5'- cGCGGCGcaGACGGCAuuGACGgCGCGGAc -3'
miRNA:   3'- -CGCCGCc-UUGCCGU--CUGCgGCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 83733 0.75 0.277089
Target:  5'- cGCGGCGGcagagaugcccucuGCGGCAGAcagcccuCGCCGguGAg -3'
miRNA:   3'- -CGCCGCCu-------------UGCCGUCU-------GCGGCguCUa -5'
24414 3' -60.2 NC_005264.1 + 59982 0.74 0.293966
Target:  5'- cGCGGCGGuggccgcgagcgaGACGGCcgcGugGCCGCGGc- -3'
miRNA:   3'- -CGCCGCC-------------UUGCCGu--CugCGGCGUCua -5'
24414 3' -60.2 NC_005264.1 + 134982 0.74 0.308175
Target:  5'- gGCGGCGGcGCauugGGCGGAUGCCGCcgcGAc -3'
miRNA:   3'- -CGCCGCCuUG----CCGUCUGCGGCGu--CUa -5'
24414 3' -60.2 NC_005264.1 + 81897 0.74 0.308175
Target:  5'- gGCGGC-GAugGGCGGGCgaGCCaGCAGAa -3'
miRNA:   3'- -CGCCGcCUugCCGUCUG--CGG-CGUCUa -5'
24414 3' -60.2 NC_005264.1 + 133194 0.74 0.314423
Target:  5'- cGCGGCGGAccgACuGCGGgccucguucguccGCGCCGUAGAg -3'
miRNA:   3'- -CGCCGCCU---UGcCGUC-------------UGCGGCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 57876 0.74 0.322189
Target:  5'- aCGGCGGcACGGCGGccAUGgCGCGGAUg -3'
miRNA:   3'- cGCCGCCuUGCCGUC--UGCgGCGUCUA- -5'
24414 3' -60.2 NC_005264.1 + 30428 0.73 0.335939
Target:  5'- uGCGGCGGAGgaggucuCGGgGGA-GCCGCGGGc -3'
miRNA:   3'- -CGCCGCCUU-------GCCgUCUgCGGCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 149455 0.73 0.335939
Target:  5'- uGCGGCGGAGgaggucuCGGgGGA-GCCGCGGGc -3'
miRNA:   3'- -CGCCGCCUU-------GCCgUCUgCGGCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 126125 0.73 0.350869
Target:  5'- cGCGGCGGcugagccGAUGGCAcuuGCGCgGCAGAa -3'
miRNA:   3'- -CGCCGCC-------UUGCCGUc--UGCGgCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 37797 0.73 0.351628
Target:  5'- aGCGGCGGAGaagaGGC--GCGCCGCcGAc -3'
miRNA:   3'- -CGCCGCCUUg---CCGucUGCGGCGuCUa -5'
24414 3' -60.2 NC_005264.1 + 5285 0.73 0.351628
Target:  5'- aCGGCGGGGCGGCGgcuGAC-CCGUGGGg -3'
miRNA:   3'- cGCCGCCUUGCCGU---CUGcGGCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 59755 0.73 0.351628
Target:  5'- gGCGGCGGcuGCGacGCGGACGCuuCGCGGGa -3'
miRNA:   3'- -CGCCGCCu-UGC--CGUCUGCG--GCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 122046 0.73 0.351628
Target:  5'- cGCGGCa-AGCGGCuccgcucucGGCGCCGCGGAa -3'
miRNA:   3'- -CGCCGccUUGCCGu--------CUGCGGCGUCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.