Results 21 - 40 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24414 | 5' | -53.1 | NC_005264.1 | + | 102907 | 0.7 | 0.863225 |
Target: 5'- gCGACGCUGGUGGaacucUUGGCCgaGCUGCg -3' miRNA: 3'- -GCUGCGACUACUac---GAUCGG--CGAUGg -5' |
|||||||
24414 | 5' | -53.1 | NC_005264.1 | + | 100381 | 0.69 | 0.892185 |
Target: 5'- -aAUGCUGcgGAUGCc-GCUGCUGCg -3' miRNA: 3'- gcUGCGACuaCUACGauCGGCGAUGg -5' |
|||||||
24414 | 5' | -53.1 | NC_005264.1 | + | 98012 | 0.69 | 0.892185 |
Target: 5'- aGuACGC--AUGGUGCUGGCCGaCUucaGCCu -3' miRNA: 3'- gC-UGCGacUACUACGAUCGGC-GA---UGG- -5' |
|||||||
24414 | 5' | -53.1 | NC_005264.1 | + | 93778 | 0.67 | 0.966701 |
Target: 5'- gCGACGaC-GAUGAccUGCccggcGGCCGCgGCCa -3' miRNA: 3'- -GCUGC-GaCUACU--ACGa----UCGGCGaUGG- -5' |
|||||||
24414 | 5' | -53.1 | NC_005264.1 | + | 92594 | 0.67 | 0.966701 |
Target: 5'- cCGACGCgggcagguuUGAUGc-GCUGGCC-CUGCa -3' miRNA: 3'- -GCUGCG---------ACUACuaCGAUCGGcGAUGg -5' |
|||||||
24414 | 5' | -53.1 | NC_005264.1 | + | 90651 | 0.66 | 0.977832 |
Target: 5'- gGGCGCgcgGA-GAccgcauUGCUGGCgGCUAUg -3' miRNA: 3'- gCUGCGa--CUaCU------ACGAUCGgCGAUGg -5' |
|||||||
24414 | 5' | -53.1 | NC_005264.1 | + | 85624 | 0.66 | 0.975351 |
Target: 5'- cCGAUGCcGuUGcUGC-AGCCGCUaaugGCCg -3' miRNA: 3'- -GCUGCGaCuACuACGaUCGGCGA----UGG- -5' |
|||||||
24414 | 5' | -53.1 | NC_005264.1 | + | 84950 | 0.66 | 0.980123 |
Target: 5'- uGGCGCcg--GGUGCUcgcuugcggccaGGCUGCUGCg -3' miRNA: 3'- gCUGCGacuaCUACGA------------UCGGCGAUGg -5' |
|||||||
24414 | 5' | -53.1 | NC_005264.1 | + | 81398 | 0.69 | 0.898849 |
Target: 5'- aGAUGCaUGcgGGUGCgcGCCGCUugguGCUc -3' miRNA: 3'- gCUGCG-ACuaCUACGauCGGCGA----UGG- -5' |
|||||||
24414 | 5' | -53.1 | NC_005264.1 | + | 80632 | 0.7 | 0.87377 |
Target: 5'- gCGAUGCUGgcGccGCUaccgucuaauacgauGGCCGCcGCCg -3' miRNA: 3'- -GCUGCGACuaCuaCGA---------------UCGGCGaUGG- -5' |
|||||||
24414 | 5' | -53.1 | NC_005264.1 | + | 78739 | 0.67 | 0.966701 |
Target: 5'- uCGGCGgUGAUuugccaucaGAUGCgc-CCGCUGCUc -3' miRNA: 3'- -GCUGCgACUA---------CUACGaucGGCGAUGG- -5' |
|||||||
24414 | 5' | -53.1 | NC_005264.1 | + | 66448 | 0.66 | 0.980123 |
Target: 5'- gGGCGCUuccGAUGGggagaugGCaccGCCGCgGCCa -3' miRNA: 3'- gCUGCGA---CUACUa------CGau-CGGCGaUGG- -5' |
|||||||
24414 | 5' | -53.1 | NC_005264.1 | + | 66372 | 0.71 | 0.822259 |
Target: 5'- aGACGUUGGUGGccgacucgcUGgaAGCCGCUAg- -3' miRNA: 3'- gCUGCGACUACU---------ACgaUCGGCGAUgg -5' |
|||||||
24414 | 5' | -53.1 | NC_005264.1 | + | 65731 | 0.67 | 0.9561 |
Target: 5'- aGAUGCUGGgacGAUGUgugguccGCCGUcgGCCg -3' miRNA: 3'- gCUGCGACUa--CUACGau-----CGGCGa-UGG- -5' |
|||||||
24414 | 5' | -53.1 | NC_005264.1 | + | 59121 | 0.73 | 0.738081 |
Target: 5'- cCGcCGCUGAUGccGCgccGCCGCU-CCa -3' miRNA: 3'- -GCuGCGACUACuaCGau-CGGCGAuGG- -5' |
|||||||
24414 | 5' | -53.1 | NC_005264.1 | + | 54847 | 0.7 | 0.878156 |
Target: 5'- -cACGCUGucucacugcGUGAUGCUcaaAGCCGCU-CUa -3' miRNA: 3'- gcUGCGAC---------UACUACGA---UCGGCGAuGG- -5' |
|||||||
24414 | 5' | -53.1 | NC_005264.1 | + | 48735 | 0.67 | 0.9561 |
Target: 5'- gCGAUGCUGAUGAaGC-GGCuCGUaACUc -3' miRNA: 3'- -GCUGCGACUACUaCGaUCG-GCGaUGG- -5' |
|||||||
24414 | 5' | -53.1 | NC_005264.1 | + | 40789 | 0.69 | 0.892185 |
Target: 5'- gCGGCGCcGA-GA-GCggAGCCGCUuGCCg -3' miRNA: 3'- -GCUGCGaCUaCUaCGa-UCGGCGA-UGG- -5' |
|||||||
24414 | 5' | -53.1 | NC_005264.1 | + | 39632 | 0.68 | 0.923092 |
Target: 5'- aCGGCGCUG-UGGUuuU-GCCGCgcgGCCu -3' miRNA: 3'- -GCUGCGACuACUAcgAuCGGCGa--UGG- -5' |
|||||||
24414 | 5' | -53.1 | NC_005264.1 | + | 36655 | 0.7 | 0.863225 |
Target: 5'- cCGuGCGCgGAUGGacCUGGCCGCgACCa -3' miRNA: 3'- -GC-UGCGaCUACUacGAUCGGCGaUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home