Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24414 | 5' | -53.1 | NC_005264.1 | + | 103584 | 1.13 | 0.003086 |
Target: 5'- gCGACGCUGAUGAUGCUAGCCGCUACCg -3' miRNA: 3'- -GCUGCGACUACUACGAUCGGCGAUGG- -5' |
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24414 | 5' | -53.1 | NC_005264.1 | + | 130026 | 0.68 | 0.93065 |
Target: 5'- aCGGCGCcgcaggcuuccgcgaUGAUGGuUGCggccagaccGUCGCUGCCg -3' miRNA: 3'- -GCUGCG---------------ACUACU-ACGau-------CGGCGAUGG- -5' |
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24414 | 5' | -53.1 | NC_005264.1 | + | 6886 | 0.71 | 0.839234 |
Target: 5'- uCGGCGC--GUGuUGCUguugccuuGGCUGCUGCCg -3' miRNA: 3'- -GCUGCGacUACuACGA--------UCGGCGAUGG- -5' |
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24414 | 5' | -53.1 | NC_005264.1 | + | 130276 | 0.71 | 0.8135 |
Target: 5'- gCGACGUUGcgGcgGCUA-CCGCggcaGCCa -3' miRNA: 3'- -GCUGCGACuaCuaCGAUcGGCGa---UGG- -5' |
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24414 | 5' | -53.1 | NC_005264.1 | + | 54847 | 0.7 | 0.878156 |
Target: 5'- -cACGCUGucucacugcGUGAUGCUcaaAGCCGCU-CUa -3' miRNA: 3'- gcUGCGAC---------UACUACGA---UCGGCGAuGG- -5' |
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24414 | 5' | -53.1 | NC_005264.1 | + | 142765 | 0.71 | 0.830839 |
Target: 5'- aCGA-GCUGAcGGUGCUuGCuCGCUACg -3' miRNA: 3'- -GCUgCGACUaCUACGAuCG-GCGAUGg -5' |
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24414 | 5' | -53.1 | NC_005264.1 | + | 155677 | 0.66 | 0.972674 |
Target: 5'- cCGACccguGCggGAUGGacCUGGCCGCgACCa -3' miRNA: 3'- -GCUG----CGa-CUACUacGAUCGGCGaUGG- -5' |
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24414 | 5' | -53.1 | NC_005264.1 | + | 125912 | 0.71 | 0.839234 |
Target: 5'- uCGGCGC--GUGuUGCUguugccuuGGCUGCUGCCg -3' miRNA: 3'- -GCUGCGacUACuACGA--------UCGGCGAUGG- -5' |
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24414 | 5' | -53.1 | NC_005264.1 | + | 133163 | 0.66 | 0.972674 |
Target: 5'- aCGAgGCUGGacgcucccUGAUGCUAcGCaaCGCggcggACCg -3' miRNA: 3'- -GCUgCGACU--------ACUACGAU-CG--GCGa----UGG- -5' |
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24414 | 5' | -53.1 | NC_005264.1 | + | 65731 | 0.67 | 0.9561 |
Target: 5'- aGAUGCUGGgacGAUGUgugguccGCCGUcgGCCg -3' miRNA: 3'- gCUGCGACUa--CUACGau-----CGGCGa-UGG- -5' |
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24414 | 5' | -53.1 | NC_005264.1 | + | 33641 | 0.7 | 0.878156 |
Target: 5'- gCGACgGUUGGUcgacGGUGCUAGCCGac-CCa -3' miRNA: 3'- -GCUG-CGACUA----CUACGAUCGGCgauGG- -5' |
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24414 | 5' | -53.1 | NC_005264.1 | + | 85624 | 0.66 | 0.975351 |
Target: 5'- cCGAUGCcGuUGcUGC-AGCCGCUaaugGCCg -3' miRNA: 3'- -GCUGCGaCuACuACGaUCGGCGA----UGG- -5' |
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24414 | 5' | -53.1 | NC_005264.1 | + | 98012 | 0.69 | 0.892185 |
Target: 5'- aGuACGC--AUGGUGCUGGCCGaCUucaGCCu -3' miRNA: 3'- gC-UGCGacUACUACGAUCGGC-GA---UGG- -5' |
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24414 | 5' | -53.1 | NC_005264.1 | + | 31895 | 0.66 | 0.977832 |
Target: 5'- uCGAUGCUGAcGuUGCgaaGGUaaGCUACCg -3' miRNA: 3'- -GCUGCGACUaCuACGa--UCGg-CGAUGG- -5' |
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24414 | 5' | -53.1 | NC_005264.1 | + | 116426 | 0.66 | 0.980123 |
Target: 5'- aGGuCGCUGggGgcGuCUGGCCGCggggGCg -3' miRNA: 3'- gCU-GCGACuaCuaC-GAUCGGCGa---UGg -5' |
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24414 | 5' | -53.1 | NC_005264.1 | + | 39632 | 0.68 | 0.923092 |
Target: 5'- aCGGCGCUG-UGGUuuU-GCCGCgcgGCCu -3' miRNA: 3'- -GCUGCGACuACUAcgAuCGGCGa--UGG- -5' |
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24414 | 5' | -53.1 | NC_005264.1 | + | 105528 | 0.66 | 0.980123 |
Target: 5'- uCGAUGCgGAUgcGAUcGCUGaguGCCGCUAgCu -3' miRNA: 3'- -GCUGCGaCUA--CUA-CGAU---CGGCGAUgG- -5' |
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24414 | 5' | -53.1 | NC_005264.1 | + | 142808 | 0.68 | 0.938698 |
Target: 5'- uGACGCUGcacgGGUGCgagcgcGCCGUgguagACCc -3' miRNA: 3'- gCUGCGACua--CUACGau----CGGCGa----UGG- -5' |
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24414 | 5' | -53.1 | NC_005264.1 | + | 128101 | 0.68 | 0.94341 |
Target: 5'- -cGCGCUGAggacgagcGAUGCcAGCUGggGCCg -3' miRNA: 3'- gcUGCGACUa-------CUACGaUCGGCgaUGG- -5' |
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24414 | 5' | -53.1 | NC_005264.1 | + | 26049 | 0.67 | 0.947879 |
Target: 5'- -cACGCUaGAUaGGUGgUGGCCGUgugUGCCu -3' miRNA: 3'- gcUGCGA-CUA-CUACgAUCGGCG---AUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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