miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24429 5' -62.9 NC_005264.1 + 66508 0.66 0.59625
Target:  5'- uGGCGCgguacAGCGAGCGUGcccugacgacgaccGCGUUGCGg -3'
miRNA:   3'- cCCGCG-----UCGCUCGCGCc-------------CGCGAUGCa -5'
24429 5' -62.9 NC_005264.1 + 37661 0.66 0.631239
Target:  5'- -cGUGCAcGCGAugcGCGaCGGGCGC-GCGg -3'
miRNA:   3'- ccCGCGU-CGCU---CGC-GCCCGCGaUGCa -5'
24429 5' -62.9 NC_005264.1 + 15569 0.66 0.64
Target:  5'- cGGcGUGCAGCucguGGCcaagcuuGCGGGCGCagcUGCGg -3'
miRNA:   3'- -CC-CGCGUCGc---UCG-------CGCCCGCG---AUGCa -5'
24429 5' -62.9 NC_005264.1 + 39224 0.66 0.640973
Target:  5'- cGGCGCuGGCGGG-GaGGGC-CUGCGUu -3'
miRNA:   3'- cCCGCG-UCGCUCgCgCCCGcGAUGCA- -5'
24429 5' -62.9 NC_005264.1 + 54703 0.66 0.640973
Target:  5'- cGGCGCcgaggacagGGUGGGaaGCGuGGCGCUcACGUg -3'
miRNA:   3'- cCCGCG---------UCGCUCg-CGC-CCGCGA-UGCA- -5'
24429 5' -62.9 NC_005264.1 + 79883 0.66 0.640973
Target:  5'- gGGGCGCGGCGGcgaccGuCGCaGGCG--ACGUc -3'
miRNA:   3'- -CCCGCGUCGCU-----C-GCGcCCGCgaUGCA- -5'
24429 5' -62.9 NC_005264.1 + 30395 0.66 0.640973
Target:  5'- cGGCgGCGGCGgucgcgcgccGGUGCGGaGaGCUGCGg -3'
miRNA:   3'- cCCG-CGUCGC----------UCGCGCC-CgCGAUGCa -5'
24429 5' -62.9 NC_005264.1 + 158251 0.66 0.640973
Target:  5'- cGGCGCuGGCGGG-GaGGGC-CUGCGUu -3'
miRNA:   3'- cCCGCG-UCGCUCgCgCCCGcGAUGCA- -5'
24429 5' -62.9 NC_005264.1 + 19431 0.66 0.592376
Target:  5'- cGGGUGUGGCcgcgGGGCGCGGGUGg----- -3'
miRNA:   3'- -CCCGCGUCG----CUCGCGCCCGCgaugca -5'
24429 5' -62.9 NC_005264.1 + 21508 0.66 0.640973
Target:  5'- uGGGCaccgccgucGCAGUGGGCGCaGGUGUaguugACGc -3'
miRNA:   3'- -CCCG---------CGUCGCUCGCGcCCGCGa----UGCa -5'
24429 5' -62.9 NC_005264.1 + 149422 0.66 0.640973
Target:  5'- cGGCgGCGGCGgucgcgcgccGGUGCGGaGaGCUGCGg -3'
miRNA:   3'- cCCG-CGUCGC----------UCGCGCC-CgCGAUGCa -5'
24429 5' -62.9 NC_005264.1 + 60845 0.66 0.61178
Target:  5'- uGGCGuCGGCGucGGCGCGuGCGCgGCa- -3'
miRNA:   3'- cCCGC-GUCGC--UCGCGCcCGCGaUGca -5'
24429 5' -62.9 NC_005264.1 + 48372 0.66 0.61178
Target:  5'- -uGCGCAGUGccGCGuCGaGGCGCUcgACGUu -3'
miRNA:   3'- ccCGCGUCGCu-CGC-GC-CCGCGA--UGCA- -5'
24429 5' -62.9 NC_005264.1 + 117424 0.66 0.631239
Target:  5'- gGGGCuGUcGCGGcGCGCaGGGCGCcGCc- -3'
miRNA:   3'- -CCCG-CGuCGCU-CGCG-CCCGCGaUGca -5'
24429 5' -62.9 NC_005264.1 + 19371 0.66 0.602068
Target:  5'- cGGCGUcagguaAGCGuGCGUuugGGGCGCauugGCGa -3'
miRNA:   3'- cCCGCG------UCGCuCGCG---CCCGCGa---UGCa -5'
24429 5' -62.9 NC_005264.1 + 138999 0.66 0.631239
Target:  5'- uGGCuacagaCAGCGAuaGCGGGaGCUGCGa -3'
miRNA:   3'- cCCGc-----GUCGCUcgCGCCCgCGAUGCa -5'
24429 5' -62.9 NC_005264.1 + 150052 0.66 0.621506
Target:  5'- uGGGCGacggugccgccUAGCGGucGUGCGGcuGCGUUGCGg -3'
miRNA:   3'- -CCCGC-----------GUCGCU--CGCGCC--CGCGAUGCa -5'
24429 5' -62.9 NC_005264.1 + 156687 0.66 0.631239
Target:  5'- -cGUGCAcGCGAugcGCGaCGGGCGC-GCGg -3'
miRNA:   3'- ccCGCGU-CGCU---CGC-GCCCGCGaUGCa -5'
24429 5' -62.9 NC_005264.1 + 120656 0.66 0.61178
Target:  5'- uGGGCGCGGCuccaaccuGCcaucucuuucCGGGCGUUACGc -3'
miRNA:   3'- -CCCGCGUCGcu------CGc---------GCCCGCGAUGCa -5'
24429 5' -62.9 NC_005264.1 + 159805 0.66 0.620533
Target:  5'- aGGaGaCGCAGCG-GCGCugcaaacugcgggGGGCGCUGg-- -3'
miRNA:   3'- -CC-C-GCGUCGCuCGCG-------------CCCGCGAUgca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.