miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24429 5' -62.9 NC_005264.1 + 117511 0.68 0.479651
Target:  5'- cGGGCGCGGCGcGUcuGCGGuCGCUccccuaauccugGCGUc -3'
miRNA:   3'- -CCCGCGUCGCuCG--CGCCcGCGA------------UGCA- -5'
24429 5' -62.9 NC_005264.1 + 154813 0.71 0.339986
Target:  5'- aGGGCGCGGUGGcGCcgucgugGCGGGCGCcucUGCc- -3'
miRNA:   3'- -CCCGCGUCGCU-CG-------CGCCCGCG---AUGca -5'
24429 5' -62.9 NC_005264.1 + 18059 0.71 0.340712
Target:  5'- cGGCGCcGCGAGC-CaGGGCGC-GCGg -3'
miRNA:   3'- cCCGCGuCGCUCGcG-CCCGCGaUGCa -5'
24429 5' -62.9 NC_005264.1 + 129338 0.71 0.355472
Target:  5'- cGGGCGCAGCGAcGCGCacugagcaaGCGCggaACGa -3'
miRNA:   3'- -CCCGCGUCGCU-CGCGcc-------CGCGa--UGCa -5'
24429 5' -62.9 NC_005264.1 + 119270 0.7 0.378443
Target:  5'- uGGCGCcacAGCGAG-GCGGGcCGCU-CGa -3'
miRNA:   3'- cCCGCG---UCGCUCgCGCCC-GCGAuGCa -5'
24429 5' -62.9 NC_005264.1 + 125496 0.7 0.378443
Target:  5'- cGGCGCGGCGAaCGUcgGGGUGC-GCGg -3'
miRNA:   3'- cCCGCGUCGCUcGCG--CCCGCGaUGCa -5'
24429 5' -62.9 NC_005264.1 + 32921 0.7 0.410583
Target:  5'- -cGCGCAG-GGGuCGCgGGGCGCcGCGUg -3'
miRNA:   3'- ccCGCGUCgCUC-GCG-CCCGCGaUGCA- -5'
24429 5' -62.9 NC_005264.1 + 52211 0.69 0.444365
Target:  5'- gGGGCGCGGUG-GCGCGaGCuGgUACGc -3'
miRNA:   3'- -CCCGCGUCGCuCGCGCcCG-CgAUGCa -5'
24429 5' -62.9 NC_005264.1 + 136365 0.69 0.453052
Target:  5'- uGGGCGCuGCcGGCGCGaauaGCGCUGUGg -3'
miRNA:   3'- -CCCGCGuCGcUCGCGCc---CGCGAUGCa -5'
24429 5' -62.9 NC_005264.1 + 55156 0.71 0.3335
Target:  5'- uGGCGCAGCGuauGCGgccucUGGGCGCggcugaagGCGg -3'
miRNA:   3'- cCCGCGUCGCu--CGC-----GCCCGCGa-------UGCa -5'
24429 5' -62.9 NC_005264.1 + 143886 0.72 0.312541
Target:  5'- cGGCGCGGCGGGCGCaacgucgauuguGGGaCGUUucuCGUc -3'
miRNA:   3'- cCCGCGUCGCUCGCG------------CCC-GCGAu--GCA- -5'
24429 5' -62.9 NC_005264.1 + 153281 0.72 0.30578
Target:  5'- cGGCuucuGUAGCGAgGCGCGGGCGacGCGUc -3'
miRNA:   3'- cCCG----CGUCGCU-CGCGCCCGCgaUGCA- -5'
24429 5' -62.9 NC_005264.1 + 122644 0.77 0.148445
Target:  5'- gGGGgGCcGCGAGgGCGGGCGCgcugACa- -3'
miRNA:   3'- -CCCgCGuCGCUCgCGCCCGCGa---UGca -5'
24429 5' -62.9 NC_005264.1 + 121913 0.75 0.198082
Target:  5'- gGGGCGCGGCGcGGCGgggaGGGCGacgGCGa -3'
miRNA:   3'- -CCCGCGUCGC-UCGCg---CCCGCga-UGCa -5'
24429 5' -62.9 NC_005264.1 + 91890 0.75 0.202815
Target:  5'- gGGGUgguuggccgcgGCAGCGAuGgGCGGGCGCgGCGa -3'
miRNA:   3'- -CCCG-----------CGUCGCU-CgCGCCCGCGaUGCa -5'
24429 5' -62.9 NC_005264.1 + 35529 0.74 0.233309
Target:  5'- uGGGCGCGGCGAaaccuauaggGCGUagugGGGCaCUGCGg -3'
miRNA:   3'- -CCCGCGUCGCU----------CGCG----CCCGcGAUGCa -5'
24429 5' -62.9 NC_005264.1 + 150212 0.73 0.261588
Target:  5'- aGGGCG-AGCGAGUGggacgGGGgGCUGCGg -3'
miRNA:   3'- -CCCGCgUCGCUCGCg----CCCgCGAUGCa -5'
24429 5' -62.9 NC_005264.1 + 162231 0.73 0.261588
Target:  5'- cGGGCcgGCGGgGGGgGgGGGgGCUACGg -3'
miRNA:   3'- -CCCG--CGUCgCUCgCgCCCgCGAUGCa -5'
24429 5' -62.9 NC_005264.1 + 4190 0.73 0.261588
Target:  5'- gGGGUGCAGCGGuauuucuucaucGC-CGGGUGCcGCGUg -3'
miRNA:   3'- -CCCGCGUCGCU------------CGcGCCCGCGaUGCA- -5'
24429 5' -62.9 NC_005264.1 + 76349 0.72 0.299132
Target:  5'- -cGCGCGGCGAcuGCGCGcaGGCGCgUugGUa -3'
miRNA:   3'- ccCGCGUCGCU--CGCGC--CCGCG-AugCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.