miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24429 5' -62.9 NC_005264.1 + 95470 1.08 0.000875
Target:  5'- cGGGCGCAGCGAGCGCGGGCGCUACGUu -3'
miRNA:   3'- -CCCGCGUCGCUCGCGCCCGCGAUGCA- -5'
24429 5' -62.9 NC_005264.1 + 159402 0.77 0.13459
Target:  5'- uGGCGCuuuGCGAgcaGCGCGGGCGCggcccUACGUc -3'
miRNA:   3'- cCCGCGu--CGCU---CGCGCCCGCG-----AUGCA- -5'
24429 5' -62.9 NC_005264.1 + 40375 0.77 0.13459
Target:  5'- uGGCGCuuuGCGAgcaGCGCGGGCGCggcccUACGUc -3'
miRNA:   3'- cCCGCGu--CGCU---CGCGCCCGCG-----AUGCA- -5'
24429 5' -62.9 NC_005264.1 + 3617 0.77 0.148445
Target:  5'- gGGGgGCcGCGAGgGCGGGCGCgcugACa- -3'
miRNA:   3'- -CCCgCGuCGCUCgCGCCCGCGa---UGca -5'
24429 5' -62.9 NC_005264.1 + 122644 0.77 0.148445
Target:  5'- gGGGgGCcGCGAGgGCGGGCGCgcugACa- -3'
miRNA:   3'- -CCCgCGuCGCUCgCGCCCGCGa---UGca -5'
24429 5' -62.9 NC_005264.1 + 131603 0.77 0.152106
Target:  5'- aGGGaGCGGCGcGCGUGGGCGCgcGCGg -3'
miRNA:   3'- -CCCgCGUCGCuCGCGCCCGCGa-UGCa -5'
24429 5' -62.9 NC_005264.1 + 79415 0.75 0.193446
Target:  5'- aGGcCGCGGCGgaacccAGCGUGGGCGgUGCGg -3'
miRNA:   3'- cCC-GCGUCGC------UCGCGCCCGCgAUGCa -5'
24429 5' -62.9 NC_005264.1 + 2887 0.75 0.198082
Target:  5'- gGGGCGCGGCGcGGCGgggaGGGCGacgGCGa -3'
miRNA:   3'- -CCCGCGUCGC-UCGCg---CCCGCga-UGCa -5'
24429 5' -62.9 NC_005264.1 + 121913 0.75 0.198082
Target:  5'- gGGGCGCGGCGcGGCGgggaGGGCGacgGCGa -3'
miRNA:   3'- -CCCGCGUCGC-UCGCg---CCCGCga-UGCa -5'
24429 5' -62.9 NC_005264.1 + 91890 0.75 0.202815
Target:  5'- gGGGUgguuggccgcgGCAGCGAuGgGCGGGCGCgGCGa -3'
miRNA:   3'- -CCCG-----------CGUCGCU-CgCGCCCGCGaUGCa -5'
24429 5' -62.9 NC_005264.1 + 120125 0.75 0.207646
Target:  5'- gGGGCGCAGCGAGCaggaggaCGGaGCGCcggccgGCGa -3'
miRNA:   3'- -CCCGCGUCGCUCGc------GCC-CGCGa-----UGCa -5'
24429 5' -62.9 NC_005264.1 + 35529 0.74 0.233309
Target:  5'- uGGGCGCGGCGAaaccuauaggGCGUagugGGGCaCUGCGg -3'
miRNA:   3'- -CCCGCGUCGCU----------CGCG----CCCGcGAUGCa -5'
24429 5' -62.9 NC_005264.1 + 4190 0.73 0.261588
Target:  5'- gGGGUGCAGCGGuauuucuucaucGC-CGGGUGCcGCGUg -3'
miRNA:   3'- -CCCGCGUCGCU------------CGcGCCCGCGaUGCA- -5'
24429 5' -62.9 NC_005264.1 + 162231 0.73 0.261588
Target:  5'- cGGGCcgGCGGgGGGgGgGGGgGCUACGg -3'
miRNA:   3'- -CCCG--CGUCgCUCgCgCCCgCGAUGCa -5'
24429 5' -62.9 NC_005264.1 + 31185 0.73 0.261588
Target:  5'- aGGGCG-AGCGAGUGggacgGGGgGCUGCGg -3'
miRNA:   3'- -CCCGCgUCGCUCGCg----CCCgCGAUGCa -5'
24429 5' -62.9 NC_005264.1 + 150212 0.73 0.261588
Target:  5'- aGGGCG-AGCGAGUGggacgGGGgGCUGCGg -3'
miRNA:   3'- -CCCGCgUCGCUCGCg----CCCgCGAUGCa -5'
24429 5' -62.9 NC_005264.1 + 48375 0.73 0.261588
Target:  5'- gGGGCGCAGCcgguagacugGGGCGuCGGGCG--GCGg -3'
miRNA:   3'- -CCCGCGUCG----------CUCGC-GCCCGCgaUGCa -5'
24429 5' -62.9 NC_005264.1 + 43204 0.73 0.261588
Target:  5'- cGGGCcgGCGGgGGGgGgGGGgGCUACGg -3'
miRNA:   3'- -CCCG--CGUCgCUCgCgCCCgCGAUGCa -5'
24429 5' -62.9 NC_005264.1 + 29478 0.72 0.288728
Target:  5'- gGGGCGguGC-AGCGCaGGGCuaggcaagaagagaaGCUGCGa -3'
miRNA:   3'- -CCCGCguCGcUCGCG-CCCG---------------CGAUGCa -5'
24429 5' -62.9 NC_005264.1 + 76349 0.72 0.299132
Target:  5'- -cGCGCGGCGAcuGCGCGcaGGCGCgUugGUa -3'
miRNA:   3'- ccCGCGUCGCU--CGCGC--CCGCG-AugCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.