miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24429 5' -62.9 NC_005264.1 + 243 0.7 0.378443
Target:  5'- uGGCGCcacAGCGAG-GCGGGcCGCU-CGa -3'
miRNA:   3'- cCCGCG---UCGCUCgCGCCC-GCGAuGCa -5'
24429 5' -62.9 NC_005264.1 + 386 0.68 0.495059
Target:  5'- gGGGgGCAGCGccGGCGCGGucguguaccuguucGCGUagucugUGCGUu -3'
miRNA:   3'- -CCCgCGUCGC--UCGCGCC--------------CGCG------AUGCA- -5'
24429 5' -62.9 NC_005264.1 + 1629 0.66 0.61178
Target:  5'- uGGGCGCGGCuccaaccuGCcaucucuuucCGGGCGUUACGc -3'
miRNA:   3'- -CCCGCGUCGcu------CGc---------GCCCGCGAUGCa -5'
24429 5' -62.9 NC_005264.1 + 2887 0.75 0.198082
Target:  5'- gGGGCGCGGCGcGGCGgggaGGGCGacgGCGa -3'
miRNA:   3'- -CCCGCGUCGC-UCGCg---CCCGCga-UGCa -5'
24429 5' -62.9 NC_005264.1 + 3376 0.68 0.515324
Target:  5'- uGGGgGCGGCGAGggcuucuccggaaCGCGGGguCGgUGCGc -3'
miRNA:   3'- -CCCgCGUCGCUC-------------GCGCCC--GCgAUGCa -5'
24429 5' -62.9 NC_005264.1 + 3617 0.77 0.148445
Target:  5'- gGGGgGCcGCGAGgGCGGGCGCgcugACa- -3'
miRNA:   3'- -CCCgCGuCGCUCgCGCCCGCGa---UGca -5'
24429 5' -62.9 NC_005264.1 + 4190 0.73 0.261588
Target:  5'- gGGGUGCAGCGGuauuucuucaucGC-CGGGUGCcGCGUg -3'
miRNA:   3'- -CCCGCGUCGCU------------CGcGCCCGCGaUGCA- -5'
24429 5' -62.9 NC_005264.1 + 5289 0.67 0.573076
Target:  5'- cGGgGCGGCGgcugacccguGGgGCGGGCGaCUgGCGg -3'
miRNA:   3'- cCCgCGUCGC----------UCgCGCCCGC-GA-UGCa -5'
24429 5' -62.9 NC_005264.1 + 6469 0.7 0.378443
Target:  5'- cGGCGCGGCGAaCGUcgGGGUGC-GCGg -3'
miRNA:   3'- cCCGCGUCGCUcGCG--CCCGCGaUGCa -5'
24429 5' -62.9 NC_005264.1 + 7065 0.68 0.479651
Target:  5'- cGGCGcCGGCcGGCGCcgucGCGCUGCGg -3'
miRNA:   3'- cCCGC-GUCGcUCGCGcc--CGCGAUGCa -5'
24429 5' -62.9 NC_005264.1 + 8071 0.67 0.56348
Target:  5'- cGGcCGCAGuCGGGCaCGGGCG--GCGUa -3'
miRNA:   3'- cCC-GCGUC-GCUCGcGCCCGCgaUGCA- -5'
24429 5' -62.9 NC_005264.1 + 8291 0.67 0.573076
Target:  5'- aGGCGCccGUGGGCGaCGGGgGCaccUGCGc -3'
miRNA:   3'- cCCGCGu-CGCUCGC-GCCCgCG---AUGCa -5'
24429 5' -62.9 NC_005264.1 + 10311 0.71 0.355472
Target:  5'- cGGGCGCAGCGAcGCGCacugagcaaGCGCggaACGa -3'
miRNA:   3'- -CCCGCGUCGCU-CGCGcc-------CGCGa--UGCa -5'
24429 5' -62.9 NC_005264.1 + 15569 0.66 0.64
Target:  5'- cGGcGUGCAGCucguGGCcaagcuuGCGGGCGCagcUGCGg -3'
miRNA:   3'- -CC-CGCGUCGc---UCG-------CGCCCGCG---AUGCa -5'
24429 5' -62.9 NC_005264.1 + 18059 0.71 0.340712
Target:  5'- cGGCGCcGCGAGC-CaGGGCGC-GCGg -3'
miRNA:   3'- cCCGCGuCGCUCGcG-CCCGCGaUGCa -5'
24429 5' -62.9 NC_005264.1 + 19214 0.67 0.573076
Target:  5'- uGGuGUGCAGgGAGCa-GGGCcggcaguuGCUACGUg -3'
miRNA:   3'- -CC-CGCGUCgCUCGcgCCCG--------CGAUGCA- -5'
24429 5' -62.9 NC_005264.1 + 19371 0.66 0.602068
Target:  5'- cGGCGUcagguaAGCGuGCGUuugGGGCGCauugGCGa -3'
miRNA:   3'- cCCGCG------UCGCuCGCG---CCCGCGa---UGCa -5'
24429 5' -62.9 NC_005264.1 + 19431 0.66 0.592376
Target:  5'- cGGGUGUGGCcgcgGGGCGCGGGUGg----- -3'
miRNA:   3'- -CCCGCGUCG----CUCGCGCCCGCgaugca -5'
24429 5' -62.9 NC_005264.1 + 20449 0.67 0.553928
Target:  5'- uGGGCGUAGCcGGCggacaGCGGcGCGC-AUGg -3'
miRNA:   3'- -CCCGCGUCGcUCG-----CGCC-CGCGaUGCa -5'
24429 5' -62.9 NC_005264.1 + 21508 0.66 0.640973
Target:  5'- uGGGCaccgccgucGCAGUGGGCGCaGGUGUaguugACGc -3'
miRNA:   3'- -CCCG---------CGUCGCUCGCGcCCGCGa----UGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.