miRNA display CGI


Results 21 - 40 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24452 3' -62.1 NC_005264.1 + 12554 0.66 0.653139
Target:  5'- gGCGUUcGCCGCGaagauaCCgcugaggggGGACACGGCc -3'
miRNA:   3'- gCGCGAcCGGCGCga----GG---------UCUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 48083 0.66 0.653139
Target:  5'- aGCGCaauacucgcGGCCGCGCggguucugCaCGcGCGCGGCu -3'
miRNA:   3'- gCGCGa--------CCGGCGCGa-------G-GUcUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 7173 0.66 0.672589
Target:  5'- cCGCGCacgGGUCGgGUuccccgucguugUCUgggacaacgcgAGACACGGCg -3'
miRNA:   3'- -GCGCGa--CCGGCgCG------------AGG-----------UCUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 75410 0.66 0.691919
Target:  5'- uGCGC-GGCCGCGggCaguG-UACGGCg -3'
miRNA:   3'- gCGCGaCCGGCGCgaGgu-CuGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 30507 0.66 0.632653
Target:  5'- cCGCGC-GGCCGUccuccggggaGCUCCAcGACccgccucGCuGGCg -3'
miRNA:   3'- -GCGCGaCCGGCG----------CGAGGU-CUG-------UG-CCG- -5'
24452 3' -62.1 NC_005264.1 + 146569 0.66 0.643388
Target:  5'- gGUuuCUGGCCGCGCcUCAGGCGauguguCGGUa -3'
miRNA:   3'- gCGc-GACCGGCGCGaGGUCUGU------GCCG- -5'
24452 3' -62.1 NC_005264.1 + 152241 0.66 0.653139
Target:  5'- uCGCGCgauaUGGaUCGCGgUCgCGGACuuGGCc -3'
miRNA:   3'- -GCGCG----ACC-GGCGCgAG-GUCUGugCCG- -5'
24452 3' -62.1 NC_005264.1 + 33948 0.66 0.691919
Target:  5'- gCGCGCcgGGaCCGCGC-CC-GAUAgGGg -3'
miRNA:   3'- -GCGCGa-CC-GGCGCGaGGuCUGUgCCg -5'
24452 3' -62.1 NC_005264.1 + 8065 0.66 0.643388
Target:  5'- aCGuCGC-GGCCGCag-UCGGGCACGGg -3'
miRNA:   3'- -GC-GCGaCCGGCGcgaGGUCUGUGCCg -5'
24452 3' -62.1 NC_005264.1 + 4260 0.66 0.691919
Target:  5'- cCG-GCUuGCCGCGCgggaaCCGcGGgGCGGCg -3'
miRNA:   3'- -GCgCGAcCGGCGCGa----GGU-CUgUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 97659 0.66 0.653139
Target:  5'- gGCGaaaaGGCCGCgGCcauggCCAGAgAgGGCg -3'
miRNA:   3'- gCGCga--CCGGCG-CGa----GGUCUgUgCCG- -5'
24452 3' -62.1 NC_005264.1 + 5829 0.66 0.653139
Target:  5'- gGCGgUGGCCGCcacucGC-CUGGcCGCGGUu -3'
miRNA:   3'- gCGCgACCGGCG-----CGaGGUCuGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 16155 0.66 0.661903
Target:  5'- uCGCGCagGGCggcaaugccgcccUGCGCggaggUCGGuCGCGGCa -3'
miRNA:   3'- -GCGCGa-CCG-------------GCGCGa----GGUCuGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 75646 0.66 0.672589
Target:  5'- uGUGCUGcaGCaggGCGUcgCCAGAUugGGUa -3'
miRNA:   3'- gCGCGAC--CGg--CGCGa-GGUCUGugCCG- -5'
24452 3' -62.1 NC_005264.1 + 72084 0.66 0.682273
Target:  5'- aCGUGCUGGUCGCGgUCgua--AUGGCc -3'
miRNA:   3'- -GCGCGACCGGCGCgAGgucugUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 56818 0.66 0.691919
Target:  5'- uGCGCUGcGCgGCgGCcCUAGcuaGCGGCu -3'
miRNA:   3'- gCGCGAC-CGgCG-CGaGGUCug-UGCCG- -5'
24452 3' -62.1 NC_005264.1 + 29610 0.67 0.623868
Target:  5'- gGCGCuUGGCuuCGaaaGCUCUAcGGCGCGGa -3'
miRNA:   3'- gCGCG-ACCG--GCg--CGAGGU-CUGUGCCg -5'
24452 3' -62.1 NC_005264.1 + 29112 0.66 0.632653
Target:  5'- aGCGCcgcaagGGCUGuCGUgCCAGaggcagcaccaguGCGCGGCg -3'
miRNA:   3'- gCGCGa-----CCGGC-GCGaGGUC-------------UGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 43187 0.66 0.633629
Target:  5'- uCGCGCUGcCUGCGacgCGGGC-CGGCg -3'
miRNA:   3'- -GCGCGACcGGCGCgagGUCUGuGCCG- -5'
24452 3' -62.1 NC_005264.1 + 40733 0.66 0.643388
Target:  5'- aCGgGUccucGGCCGC-CgCCAGuCGCGGCg -3'
miRNA:   3'- -GCgCGa---CCGGCGcGaGGUCuGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.