miRNA display CGI


Results 1 - 20 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24461 5' -48.4 NC_005264.1 + 159579 0.69 0.990732
Target:  5'- aUGCCCAcccaccgagaaGCGAGACGAgcGACGGAc -3'
miRNA:   3'- cGCGGGUa----------CGCUCUGUUuuCUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 159090 0.72 0.940903
Target:  5'- aGCGCCCcgGCG--GCAAGAGGCc--- -3'
miRNA:   3'- -CGCGGGuaCGCucUGUUUUCUGuuuu -5'
24461 5' -48.4 NC_005264.1 + 158715 0.66 0.999325
Target:  5'- aGCGgCCGUGUuuGGCAGAggGGACAc-- -3'
miRNA:   3'- -CGCgGGUACGcuCUGUUU--UCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 157839 0.7 0.98436
Target:  5'- gGCGaCCCcgGCGcGGACGAGAacGACGAc- -3'
miRNA:   3'- -CGC-GGGuaCGC-UCUGUUUU--CUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 157643 0.66 0.999325
Target:  5'- uCGCCgCGgcGCGAGACAc--GACAGGAg -3'
miRNA:   3'- cGCGG-GUa-CGCUCUGUuuuCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 156693 0.73 0.912755
Target:  5'- -aGCCCGcGCGAGACccAGGACGGGc -3'
miRNA:   3'- cgCGGGUaCGCUCUGuuUUCUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 155492 0.71 0.969212
Target:  5'- -aGCCgAgucUGaCGAGGCGGAGGACGAAGa -3'
miRNA:   3'- cgCGGgU---AC-GCUCUGUUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 154775 0.71 0.958604
Target:  5'- cGUGCCCGacUGCGgccgcgacgugGGugAAGAGGCGGAGg -3'
miRNA:   3'- -CGCGGGU--ACGC-----------UCugUUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 151084 0.68 0.993036
Target:  5'- gGCGCCCGga-GAGACccAAGAGuGCGAAAg -3'
miRNA:   3'- -CGCGGGUacgCUCUG--UUUUC-UGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 149437 0.69 0.99195
Target:  5'- cGCGCCgGUGCGGagagcugcGGCGGAGGAgGu-- -3'
miRNA:   3'- -CGCGGgUACGCU--------CUGUUUUCUgUuuu -5'
24461 5' -48.4 NC_005264.1 + 148563 0.7 0.982342
Target:  5'- -aGCCCAUGCcuuauuuguGGGACAcuAGAGACGc-- -3'
miRNA:   3'- cgCGGGUACG---------CUCUGU--UUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 142862 0.67 0.997351
Target:  5'- aCGUCCuUGCGAG-CGAAggcgcuucuGGACAAGAg -3'
miRNA:   3'- cGCGGGuACGCUCuGUUU---------UCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 142750 0.71 0.965919
Target:  5'- aCGCgCGUGgGAGACAu-GGACAAGc -3'
miRNA:   3'- cGCGgGUACgCUCUGUuuUCUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 139855 0.67 0.99685
Target:  5'- cGCGuCCCAUGU--GGCAcgGGGCGAAc -3'
miRNA:   3'- -CGC-GGGUACGcuCUGUuuUCUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 135154 0.68 0.994003
Target:  5'- aGCGUCg--GCGAGGCAGAGGcCAGc- -3'
miRNA:   3'- -CGCGGguaCGCUCUGUUUUCuGUUuu -5'
24461 5' -48.4 NC_005264.1 + 133249 0.73 0.918927
Target:  5'- aGCGCCgAcGCGcaAGACAAAGGACGc-- -3'
miRNA:   3'- -CGCGGgUaCGC--UCUGUUUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 132589 0.66 0.999325
Target:  5'- aGCGgCgCggGCGGGACcgggGAAGGGCGGAAc -3'
miRNA:   3'- -CGCgG-GuaCGCUCUG----UUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 132310 0.66 0.998745
Target:  5'- cGCGCCa--GCGAGGCGGGucGugGAGc -3'
miRNA:   3'- -CGCGGguaCGCUCUGUUUu-CugUUUu -5'
24461 5' -48.4 NC_005264.1 + 132021 0.67 0.99685
Target:  5'- -aGCCCGUuCGAG-CAcGAGGCGGAAa -3'
miRNA:   3'- cgCGGGUAcGCUCuGUuUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 131738 0.69 0.987867
Target:  5'- gGCGCUacaAUGCGcuacggcGACAAAAGACAu-- -3'
miRNA:   3'- -CGCGGg--UACGCu------CUGUUUUCUGUuuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.