miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24466 3' -54.1 NC_005264.1 + 39183 0.66 0.970638
Target:  5'- gGCGCgcgAC-UCUAccgcgcaucgcuUCAGAgUCUGCGGCu -3'
miRNA:   3'- -CGCGa--UGcAGAU------------AGUCU-AGGCGCCGc -5'
24466 3' -54.1 NC_005264.1 + 57961 0.66 0.970638
Target:  5'- cGUGCUugugccuauCGUC-AUCGGAgUCCccgcGCGGCGg -3'
miRNA:   3'- -CGCGAu--------GCAGaUAGUCU-AGG----CGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 16398 0.66 0.970638
Target:  5'- uCGCaugUGCGcaaGUCAGAgCCGCGGCa -3'
miRNA:   3'- cGCG---AUGCagaUAGUCUaGGCGCCGc -5'
24466 3' -54.1 NC_005264.1 + 75096 0.66 0.970638
Target:  5'- uGCGCUAC-UUgacgCAGucgcgCUGCGGCGa -3'
miRNA:   3'- -CGCGAUGcAGaua-GUCua---GGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 57847 0.66 0.970348
Target:  5'- uGCGCUGCaaacgGUC-GUCAGcgCCagagacgGCGGCa -3'
miRNA:   3'- -CGCGAUG-----CAGaUAGUCuaGG-------CGCCGc -5'
24466 3' -54.1 NC_005264.1 + 60280 0.66 0.968872
Target:  5'- aGCGCcGCGUCgggcaugacguacUCGGAUUCG-GGCGc -3'
miRNA:   3'- -CGCGaUGCAGau-----------AGUCUAGGCgCCGC- -5'
24466 3' -54.1 NC_005264.1 + 111486 0.66 0.967653
Target:  5'- aCGCUGCGcCcuUCcuGUCgGCGGCGa -3'
miRNA:   3'- cGCGAUGCaGauAGucUAGgCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 29939 0.66 0.967344
Target:  5'- cGCGCUGCGcCUagccgGUCAaccGAUCCuaggaucGCGGUa -3'
miRNA:   3'- -CGCGAUGCaGA-----UAGU---CUAGG-------CGCCGc -5'
24466 3' -54.1 NC_005264.1 + 99187 0.66 0.96446
Target:  5'- gGCGUagACGUggggucCUcgCAGGccUCCGCGGCc -3'
miRNA:   3'- -CGCGa-UGCA------GAuaGUCU--AGGCGCCGc -5'
24466 3' -54.1 NC_005264.1 + 29149 0.66 0.96446
Target:  5'- uGCGCgGCGgcaa--GGA-CCGCGGCGa -3'
miRNA:   3'- -CGCGaUGCagauagUCUaGGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 46438 0.66 0.961053
Target:  5'- uGCGCUcgACGUCggccugCGGcuuuUgCGCGGCGc -3'
miRNA:   3'- -CGCGA--UGCAGaua---GUCu---AgGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 136464 0.66 0.961053
Target:  5'- cGCGCUcagagacgGCGcCgcgCAGccugCCGCGGCGc -3'
miRNA:   3'- -CGCGA--------UGCaGauaGUCua--GGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 26469 0.66 0.957426
Target:  5'- aUGCUACGUCaUAguagaCAGAgggCCcguGCGGCGc -3'
miRNA:   3'- cGCGAUGCAG-AUa----GUCUa--GG---CGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 55775 0.66 0.957426
Target:  5'- cGCGCUGaGUCUGcuuaacCAcGcUCCGCGGCu -3'
miRNA:   3'- -CGCGAUgCAGAUa-----GU-CuAGGCGCCGc -5'
24466 3' -54.1 NC_005264.1 + 69959 0.66 0.957426
Target:  5'- uCGCUGaugCUGUUuu-UCCGCGGCGu -3'
miRNA:   3'- cGCGAUgcaGAUAGucuAGGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 117397 0.66 0.957051
Target:  5'- cGUGUcgucuaugacuauUACG-CUAUCGGGgcugUCGCGGCGc -3'
miRNA:   3'- -CGCG-------------AUGCaGAUAGUCUa---GGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 129588 0.67 0.953575
Target:  5'- cGCGCUcugcagGCG-CUG-CGGcgCgGCGGCGa -3'
miRNA:   3'- -CGCGA------UGCaGAUaGUCuaGgCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 156396 0.67 0.953575
Target:  5'- aGCGCgacgaaggAUGUCUAggguUCAGugcCUGCGGCu -3'
miRNA:   3'- -CGCGa-------UGCAGAU----AGUCua-GGCGCCGc -5'
24466 3' -54.1 NC_005264.1 + 128536 0.67 0.949495
Target:  5'- gGCGCUAUaGUUccUguGAcccacguauauuUCCGCGGCGg -3'
miRNA:   3'- -CGCGAUG-CAGauAguCU------------AGGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 162802 0.67 0.949495
Target:  5'- aGCGCU-CGUUcgaacagcUAGggCCGCGGCGu -3'
miRNA:   3'- -CGCGAuGCAGaua-----GUCuaGGCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.