Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24466 | 3' | -54.1 | NC_005264.1 | + | 162802 | 0.67 | 0.949495 |
Target: 5'- aGCGCU-CGUUcgaacagcUAGggCCGCGGCGu -3' miRNA: 3'- -CGCGAuGCAGaua-----GUCuaGGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 100039 | 0.67 | 0.945184 |
Target: 5'- cGCuGCUGCGUCcgguggaaaaaUAUCAgGGUuuGCGGgGc -3' miRNA: 3'- -CG-CGAUGCAG-----------AUAGU-CUAggCGCCgC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 50290 | 0.67 | 0.940638 |
Target: 5'- uGCGUaGCGgCUAaCAGGUCgGCGGUu -3' miRNA: 3'- -CGCGaUGCaGAUaGUCUAGgCGCCGc -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 83231 | 0.67 | 0.940638 |
Target: 5'- uGCGCguggGCGUCUAggccgccgCuGAUgCGCuGGCGc -3' miRNA: 3'- -CGCGa---UGCAGAUa-------GuCUAgGCG-CCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 77285 | 0.67 | 0.940638 |
Target: 5'- cGCGCUcgaacgaauccaACGUCagcuUCAGGUCgCG-GGCGa -3' miRNA: 3'- -CGCGA------------UGCAGau--AGUCUAG-GCgCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 46734 | 0.67 | 0.940638 |
Target: 5'- aGCGCUAUGUCUggcauguacAUCuguaccggguAGAUgggcaCGCGGCGc -3' miRNA: 3'- -CGCGAUGCAGA---------UAG----------UCUAg----GCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 7931 | 0.67 | 0.935856 |
Target: 5'- cGCGCguccacGCGUC-GUCcacggCCGCGGCGu -3' miRNA: 3'- -CGCGa-----UGCAGaUAGucua-GGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 37581 | 0.68 | 0.930835 |
Target: 5'- gGCGgcaaGUCUcgCGGcggCCGCGGCGg -3' miRNA: 3'- -CGCgaugCAGAuaGUCua-GGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 156608 | 0.68 | 0.930835 |
Target: 5'- gGCGgcaaGUCUcgCGGcggCCGCGGCGg -3' miRNA: 3'- -CGCgaugCAGAuaGUCua-GGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 130273 | 0.68 | 0.930835 |
Target: 5'- uGCGCgACGUUgcggCGGcuaCCGCGGCa -3' miRNA: 3'- -CGCGaUGCAGaua-GUCua-GGCGCCGc -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 157278 | 0.68 | 0.925576 |
Target: 5'- gGCGCUguccGCGgugCUGUCGGugacgucaGUCCcggacgGCGGCGa -3' miRNA: 3'- -CGCGA----UGCa--GAUAGUC--------UAGG------CGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 38251 | 0.68 | 0.925576 |
Target: 5'- gGCGCUguccGCGgugCUGUCGGugacgucaGUCCcggacgGCGGCGa -3' miRNA: 3'- -CGCGA----UGCa--GAUAGUC--------UAGG------CGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 133240 | 0.68 | 0.925576 |
Target: 5'- cGCGCUACG-CUucgAUCuGGAgCCGCaGGCa -3' miRNA: 3'- -CGCGAUGCaGA---UAG-UCUaGGCG-CCGc -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 102714 | 0.68 | 0.925576 |
Target: 5'- uUGCUACGcCacggUGUCGGAaaaagUCGCGGCGu -3' miRNA: 3'- cGCGAUGCaG----AUAGUCUa----GGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 93067 | 0.68 | 0.920078 |
Target: 5'- cUGCUGCGgga---GGggCCGCGGCGa -3' miRNA: 3'- cGCGAUGCagauagUCuaGGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 2663 | 0.68 | 0.920078 |
Target: 5'- gGCaGCUcugACGUCcuaGUCGGGUCCGCaaGCGg -3' miRNA: 3'- -CG-CGA---UGCAGa--UAGUCUAGGCGc-CGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 3580 | 0.68 | 0.913754 |
Target: 5'- uCGUgagGCGUcCUGUCAGGUgaguaggCCGUGGUGg -3' miRNA: 3'- cGCGa--UGCA-GAUAGUCUA-------GGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 116909 | 0.69 | 0.895714 |
Target: 5'- aGCGCUguucGCGguaccagUUGggagCAGAUugCCGCGGCGg -3' miRNA: 3'- -CGCGA----UGCa------GAUa---GUCUA--GGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 86616 | 0.69 | 0.882142 |
Target: 5'- aGCGCUACGUUgAUCAaccgCCGCaGCa -3' miRNA: 3'- -CGCGAUGCAGaUAGUcua-GGCGcCGc -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 128982 | 0.69 | 0.875021 |
Target: 5'- aCGCUccACGUUcuUCAGcucugCCGCGGCGc -3' miRNA: 3'- cGCGA--UGCAGauAGUCua---GGCGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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