miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24475 5' -55.8 NC_005264.1 + 160425 0.7 0.708145
Target:  5'- cGCGGC--CUCCGCUu-UCUUCCUAg -3'
miRNA:   3'- aCGCCGuuGAGGCGAuuAGAGGGGUg -5'
24475 5' -55.8 NC_005264.1 + 159928 0.68 0.812008
Target:  5'- -uCGGCGACUCCGuCgcucucgccgucgccCUCCCCGCc -3'
miRNA:   3'- acGCCGUUGAGGC-Gauua-----------GAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 159802 0.68 0.837636
Target:  5'- cGCGGCAAaugugcuUUCCGaccaUGAUCggaCCCCAg -3'
miRNA:   3'- aCGCCGUU-------GAGGCg---AUUAGa--GGGGUg -5'
24475 5' -55.8 NC_005264.1 + 159508 0.66 0.910412
Target:  5'- gUGUGGCGcgacuacucucGCUCCGCUugcacggcgcgcGAUC-CCgCGCg -3'
miRNA:   3'- -ACGCCGU-----------UGAGGCGA------------UUAGaGGgGUG- -5'
24475 5' -55.8 NC_005264.1 + 159139 0.7 0.715178
Target:  5'- cGCGGCAAguacugugcgcccuUUCCGCgccaggCCCCGCa -3'
miRNA:   3'- aCGCCGUU--------------GAGGCGauuagaGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 157944 0.66 0.89717
Target:  5'- gGCGGCcagcguggccucgAACUCCGCgugucgCUUgCCGCc -3'
miRNA:   3'- aCGCCG-------------UUGAGGCGauua--GAGgGGUG- -5'
24475 5' -55.8 NC_005264.1 + 157318 0.66 0.904237
Target:  5'- gGCGGCGACgUUCGUUAcgC-CUUCGCg -3'
miRNA:   3'- aCGCCGUUG-AGGCGAUuaGaGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 156293 0.66 0.897825
Target:  5'- cGCGGUgAACU-CGCagGGUCUCCCgUACg -3'
miRNA:   3'- aCGCCG-UUGAgGCGa-UUAGAGGG-GUG- -5'
24475 5' -55.8 NC_005264.1 + 154542 0.72 0.615963
Target:  5'- gUGcCGGCGAUggcaCGCgGAUCUCCCCGg -3'
miRNA:   3'- -AC-GCCGUUGag--GCGaUUAGAGGGGUg -5'
24475 5' -55.8 NC_005264.1 + 154001 0.68 0.830117
Target:  5'- --aGGCAcGCUCUGCgg--CUUCCCGCg -3'
miRNA:   3'- acgCCGU-UGAGGCGauuaGAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 150923 0.71 0.657168
Target:  5'- aGCGGCGACcgugggaaaaUCUGCgggcAUUUUCCCACg -3'
miRNA:   3'- aCGCCGUUG----------AGGCGau--UAGAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 150287 0.66 0.910412
Target:  5'- aGCGGUAuCUUCGCggcgaacgCcCCCCGCu -3'
miRNA:   3'- aCGCCGUuGAGGCGauua----GaGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 149729 0.66 0.909196
Target:  5'- gUGCGGUucagacgaguccgcGCUCCGUUcggaAuccucggagcccaagGUCUCCCCGCc -3'
miRNA:   3'- -ACGCCGu-------------UGAGGCGA----U---------------UAGAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 148918 0.68 0.830117
Target:  5'- cUGCGGCAGCUuuGCcuccugGAcguUCgcgCCCCGu -3'
miRNA:   3'- -ACGCCGUUGAggCGa-----UU---AGa--GGGGUg -5'
24475 5' -55.8 NC_005264.1 + 146831 0.66 0.910412
Target:  5'- cGCGGCGGuCgucgCCugccaugaugcgGCUaAAUCUCCCCGg -3'
miRNA:   3'- aCGCCGUU-Ga---GG------------CGA-UUAGAGGGGUg -5'
24475 5' -55.8 NC_005264.1 + 138494 0.68 0.838462
Target:  5'- cUGCGGCggUUgCCGCgcGAUUUCaCUCGCg -3'
miRNA:   3'- -ACGCCGuuGA-GGCGa-UUAGAG-GGGUG- -5'
24475 5' -55.8 NC_005264.1 + 136447 0.69 0.776501
Target:  5'- -uCGGCGGCUaCgGCUugcuUCUCCUCGCg -3'
miRNA:   3'- acGCCGUUGA-GgCGAuu--AGAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 133594 0.68 0.812888
Target:  5'- cGCGccGCAGuCUCCGCUGugCUCCUCGa -3'
miRNA:   3'- aCGC--CGUU-GAGGCGAUuaGAGGGGUg -5'
24475 5' -55.8 NC_005264.1 + 133393 0.73 0.564783
Target:  5'- cGCGGCGGCgcagcCCGUUGGUggCCCCAa -3'
miRNA:   3'- aCGCCGUUGa----GGCGAUUAgaGGGGUg -5'
24475 5' -55.8 NC_005264.1 + 132427 0.67 0.8843
Target:  5'- cGCGGCuguACaaCGCUAcgCUCgCCgGCg -3'
miRNA:   3'- aCGCCGu--UGagGCGAUuaGAG-GGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.