miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24480 3' -57.1 NC_005264.1 + 123038 0.66 0.859914
Target:  5'- --aUGCGUGCCGCgCaUCGCcaACGAGa- -3'
miRNA:   3'- uuaGCGUACGGCG-GcAGCG--UGCUCau -5'
24480 3' -57.1 NC_005264.1 + 27469 0.66 0.859914
Target:  5'- cAUUGgAgGUCGCCGUCGUacaugaACGAGUAc -3'
miRNA:   3'- uUAGCgUaCGGCGGCAGCG------UGCUCAU- -5'
24480 3' -57.1 NC_005264.1 + 116370 0.66 0.852118
Target:  5'- --cUGUAggGCCuGCCGUCGCGgGAGa- -3'
miRNA:   3'- uuaGCGUa-CGG-CGGCAGCGUgCUCau -5'
24480 3' -57.1 NC_005264.1 + 122675 0.66 0.852118
Target:  5'- cGUCGCGaugGCCGCCGUCuCgACGAu-- -3'
miRNA:   3'- uUAGCGUa--CGGCGGCAGcG-UGCUcau -5'
24480 3' -57.1 NC_005264.1 + 3648 0.66 0.852118
Target:  5'- cGUCGCGaugGCCGCCGUCuCgACGAu-- -3'
miRNA:   3'- uUAGCGUa--CGGCGGCAGcG-UGCUcau -5'
24480 3' -57.1 NC_005264.1 + 162199 0.66 0.841685
Target:  5'- uAGUCGCcgGUCGCUGUCGUuaucgucgccuccaGCGAa-- -3'
miRNA:   3'- -UUAGCGuaCGGCGGCAGCG--------------UGCUcau -5'
24480 3' -57.1 NC_005264.1 + 30385 0.66 0.835102
Target:  5'- cGUCGCGUcucggcgGCgGCgGUCGCGCGccGGUGc -3'
miRNA:   3'- uUAGCGUA-------CGgCGgCAGCGUGC--UCAU- -5'
24480 3' -57.1 NC_005264.1 + 149412 0.66 0.835102
Target:  5'- cGUCGCGUcucggcgGCgGCgGUCGCGCGccGGUGc -3'
miRNA:   3'- uUAGCGUA-------CGgCGgCAGCGUGC--UCAU- -5'
24480 3' -57.1 NC_005264.1 + 5670 0.66 0.827555
Target:  5'- --aCGCAUGCUGCguUCcCACGAGUAc -3'
miRNA:   3'- uuaGCGUACGGCGgcAGcGUGCUCAU- -5'
24480 3' -57.1 NC_005264.1 + 4252 0.66 0.827555
Target:  5'- ---aGCcucuUGCCGCCG-CGCAgCGAGUc -3'
miRNA:   3'- uuagCGu---ACGGCGGCaGCGU-GCUCAu -5'
24480 3' -57.1 NC_005264.1 + 124697 0.66 0.827555
Target:  5'- --aCGCAUGCUGCguUCcCACGAGUAc -3'
miRNA:   3'- uuaGCGUACGGCGgcAGcGUGCUCAU- -5'
24480 3' -57.1 NC_005264.1 + 66613 0.66 0.827555
Target:  5'- --cCGCGuUGCCggcGCCGUCGCGgccCGAGg- -3'
miRNA:   3'- uuaGCGU-ACGG---CGGCAGCGU---GCUCau -5'
24480 3' -57.1 NC_005264.1 + 127093 0.66 0.827555
Target:  5'- cGUCGCG-GCCGCaGUCggGCACGGGc- -3'
miRNA:   3'- uUAGCGUaCGGCGgCAG--CGUGCUCau -5'
24480 3' -57.1 NC_005264.1 + 8066 0.66 0.827555
Target:  5'- cGUCGCG-GCCGCaGUCggGCACGGGc- -3'
miRNA:   3'- uUAGCGUaCGGCGgCAG--CGUGCUCau -5'
24480 3' -57.1 NC_005264.1 + 80578 0.67 0.822442
Target:  5'- -uUCGCgcuccgGUGCCGCCuGUCGCgagccccgaaagcaaACGAGa- -3'
miRNA:   3'- uuAGCG------UACGGCGG-CAGCG---------------UGCUCau -5'
24480 3' -57.1 NC_005264.1 + 63261 0.67 0.818998
Target:  5'- ---aGCAUGCCGCUG-CGCuuguccaaGAGUAg -3'
miRNA:   3'- uuagCGUACGGCGGCaGCGug------CUCAU- -5'
24480 3' -57.1 NC_005264.1 + 41300 0.67 0.81027
Target:  5'- aAGUCGCcccccgcGCUGaaGUCGCGCGAGg- -3'
miRNA:   3'- -UUAGCGua-----CGGCggCAGCGUGCUCau -5'
24480 3' -57.1 NC_005264.1 + 160327 0.67 0.81027
Target:  5'- aAGUCGCcccccgcGCUGaaGUCGCGCGAGg- -3'
miRNA:   3'- -UUAGCGua-----CGGCggCAGCGUGCUCau -5'
24480 3' -57.1 NC_005264.1 + 104200 0.67 0.801379
Target:  5'- uGGUCGaccucGCCGCagagcacgCGUCGCACGGGUc -3'
miRNA:   3'- -UUAGCgua--CGGCG--------GCAGCGUGCUCAu -5'
24480 3' -57.1 NC_005264.1 + 38850 0.67 0.792334
Target:  5'- ---aGCGUGCCuaCGUCGCggagcuccucGCGGGUGu -3'
miRNA:   3'- uuagCGUACGGcgGCAGCG----------UGCUCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.