miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24486 5' -57.4 NC_005264.1 + 43864 0.66 0.905322
Target:  5'- cGCGGGGaagaGACGGAacgagCGCGGCaaaGGGg -3'
miRNA:   3'- cCGCCCCa---UUGCCUaca--GUGCCG---CCU- -5'
24486 5' -57.4 NC_005264.1 + 28340 0.66 0.899171
Target:  5'- cGGCGuacGGGUAGCGGgcGaCACGcGCaauuGGAg -3'
miRNA:   3'- -CCGC---CCCAUUGCCuaCaGUGC-CG----CCU- -5'
24486 5' -57.4 NC_005264.1 + 47207 0.66 0.899171
Target:  5'- aGCGGGGccACGGccGUCGauggcUGGuCGGAg -3'
miRNA:   3'- cCGCCCCauUGCCuaCAGU-----GCC-GCCU- -5'
24486 5' -57.4 NC_005264.1 + 52565 0.66 0.899171
Target:  5'- gGGCGGu---GCGGAUGgCACGGCu-- -3'
miRNA:   3'- -CCGCCccauUGCCUACaGUGCCGccu -5'
24486 5' -57.4 NC_005264.1 + 83167 0.66 0.899171
Target:  5'- cGCGGGG-AugGGGagaauuUGUCAgCGGCaGGc -3'
miRNA:   3'- cCGCCCCaUugCCU------ACAGU-GCCGcCU- -5'
24486 5' -57.4 NC_005264.1 + 91563 0.66 0.899171
Target:  5'- cGGCGGGGggcACGaGGcuUGUCGCGGa--- -3'
miRNA:   3'- -CCGCCCCau-UGC-CU--ACAGUGCCgccu -5'
24486 5' -57.4 NC_005264.1 + 126109 0.66 0.899171
Target:  5'- aGGCGGGcaa--GGaAUG-CGCGGCGGc -3'
miRNA:   3'- -CCGCCCcauugCC-UACaGUGCCGCCu -5'
24486 5' -57.4 NC_005264.1 + 91887 0.66 0.898543
Target:  5'- aGCGGGGUGguuggccGCGGcagcgAUGggcgggCGCGGCGa- -3'
miRNA:   3'- cCGCCCCAU-------UGCC-----UACa-----GUGCCGCcu -5'
24486 5' -57.4 NC_005264.1 + 155240 0.66 0.895374
Target:  5'- cGGCGGGGgaugAggaagcaucuccgcaGCGGcgcgggGUagGCGGCGGGg -3'
miRNA:   3'- -CCGCCCCa---U---------------UGCCua----CAg-UGCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 4076 0.66 0.8928
Target:  5'- aGCGGGGcUGuugcACGGGcggcGUCGCGGCa-- -3'
miRNA:   3'- cCGCCCC-AU----UGCCUa---CAGUGCCGccu -5'
24486 5' -57.4 NC_005264.1 + 57483 0.66 0.8928
Target:  5'- uGGCGGcGGcGGCGaaGAUGcuggcgcgCGCGGCGGc -3'
miRNA:   3'- -CCGCC-CCaUUGC--CUACa-------GUGCCGCCu -5'
24486 5' -57.4 NC_005264.1 + 123103 0.66 0.8928
Target:  5'- aGCGGGGcUGuugcACGGGcggcGUCGCGGCa-- -3'
miRNA:   3'- cCGCCCC-AU----UGCCUa---CAGUGCCGccu -5'
24486 5' -57.4 NC_005264.1 + 74105 0.66 0.886213
Target:  5'- uGGCGcGGUcGACGc-UGUCGCGGCuGGGg -3'
miRNA:   3'- -CCGCcCCA-UUGCcuACAGUGCCG-CCU- -5'
24486 5' -57.4 NC_005264.1 + 139396 0.66 0.872405
Target:  5'- -uUGGGGaauACGGAac-CGCGGCGGGa -3'
miRNA:   3'- ccGCCCCau-UGCCUacaGUGCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 33662 0.66 0.872405
Target:  5'- aGC-GGGUGGCGGGUaugaaUCugGgGCGGAg -3'
miRNA:   3'- cCGcCCCAUUGCCUAc----AGugC-CGCCU- -5'
24486 5' -57.4 NC_005264.1 + 108165 0.66 0.872405
Target:  5'- cGCGGGG-AGCGuaauGAUGUCcccaguCGGCGcGAc -3'
miRNA:   3'- cCGCCCCaUUGC----CUACAGu-----GCCGC-CU- -5'
24486 5' -57.4 NC_005264.1 + 150716 0.66 0.870979
Target:  5'- cGGCGGGGcuGCccgccaaagGUCGCGcGCGGGg -3'
miRNA:   3'- -CCGCCCCauUGccua-----CAGUGC-CGCCU- -5'
24486 5' -57.4 NC_005264.1 + 31690 0.66 0.870979
Target:  5'- cGGCGGGGcuGCccgccaaagGUCGCGcGCGGGg -3'
miRNA:   3'- -CCGCCCCauUGccua-----CAGUGC-CGCCU- -5'
24486 5' -57.4 NC_005264.1 + 150555 0.67 0.857783
Target:  5'- gGGCGGGGagGGCcguuGGG-GUgGgGGCGGAc -3'
miRNA:   3'- -CCGCCCCa-UUG----CCUaCAgUgCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 151886 0.67 0.857783
Target:  5'- cGCGGGcaucagcuguauGUGGCGGAgGggACGGCGGc -3'
miRNA:   3'- cCGCCC------------CAUUGCCUaCagUGCCGCCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.