Results 1 - 20 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24487 | 3' | -55.4 | NC_005264.1 | + | 45827 | 1.12 | 0.002138 |
Target: 5'- cUGUACUCGUCAUGCGCCGCGCAGACCg -3' miRNA: 3'- -ACAUGAGCAGUACGCGGCGCGUCUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 143732 | 0.85 | 0.127935 |
Target: 5'- aGUGCUCGUCuccGCGCCGCcGCGGugCa -3' miRNA: 3'- aCAUGAGCAGua-CGCGGCG-CGUCugG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 96339 | 0.84 | 0.161114 |
Target: 5'- --aGCUCGUCGagcGCGCCGCGCAGcCCg -3' miRNA: 3'- acaUGAGCAGUa--CGCGGCGCGUCuGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 103366 | 0.81 | 0.227609 |
Target: 5'- aGUACaugccagUCGUCAUGCcuGCCGCGCGGgGCCg -3' miRNA: 3'- aCAUG-------AGCAGUACG--CGGCGCGUC-UGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 56728 | 0.74 | 0.5638 |
Target: 5'- -uUGCUCuGUCGUGCcuuuCCGCGgAGGCCg -3' miRNA: 3'- acAUGAG-CAGUACGc---GGCGCgUCUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 136349 | 0.74 | 0.5638 |
Target: 5'- --aGCUgGUUcgGCGCCGCaCGGGCCc -3' miRNA: 3'- acaUGAgCAGuaCGCGGCGcGUCUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 8322 | 0.74 | 0.533944 |
Target: 5'- --cGCUUGUUugcgcgcggcauGUGCGCCcCGCAGACCu -3' miRNA: 3'- acaUGAGCAG------------UACGCGGcGCGUCUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 146330 | 0.74 | 0.540864 |
Target: 5'- uUGUACcaucCGUC-UGCGCCGgcgugccucgacccCGCAGGCCa -3' miRNA: 3'- -ACAUGa---GCAGuACGCGGC--------------GCGUCUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 49252 | 0.72 | 0.685596 |
Target: 5'- cUGUGCUCGUacaagcuaaaCA-GCGUCGCGgAGACg -3' miRNA: 3'- -ACAUGAGCA----------GUaCGCGGCGCgUCUGg -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 56807 | 0.72 | 0.665351 |
Target: 5'- -aUGCuUUGUCcUGCGCUGCGCGGcgGCCc -3' miRNA: 3'- acAUG-AGCAGuACGCGGCGCGUC--UGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 44259 | 0.72 | 0.634804 |
Target: 5'- aGUGCUguucggcgCGUCA--CGCCGCGCGGAUg -3' miRNA: 3'- aCAUGA--------GCAGUacGCGGCGCGUCUGg -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 158063 | 0.72 | 0.685596 |
Target: 5'- gGUGCgCGaacgGCGCCGCGCAGAa- -3' miRNA: 3'- aCAUGaGCaguaCGCGGCGCGUCUgg -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 84157 | 0.71 | 0.735283 |
Target: 5'- aGUGgUCG-CA-GCGCgCGCGCcGGACCu -3' miRNA: 3'- aCAUgAGCaGUaCGCG-GCGCG-UCUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 135180 | 0.71 | 0.705665 |
Target: 5'- cGUAcCUCGgucCGaGCGCCGCGU-GGCCa -3' miRNA: 3'- aCAU-GAGCa--GUaCGCGGCGCGuCUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 64141 | 0.71 | 0.695657 |
Target: 5'- --gGCUCGcCAcgGCGCCGCGauccGGCCg -3' miRNA: 3'- acaUGAGCaGUa-CGCGGCGCgu--CUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 101391 | 0.7 | 0.791871 |
Target: 5'- --cGCUCGagCAacucgGCGCCGaggaGCGGGCCg -3' miRNA: 3'- acaUGAGCa-GUa----CGCGGCg---CGUCUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 50800 | 0.7 | 0.74499 |
Target: 5'- uUGaACUUGUCGgaucgGCGCgCGCGCAGGu- -3' miRNA: 3'- -ACaUGAGCAGUa----CGCG-GCGCGUCUgg -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 31125 | 0.7 | 0.791871 |
Target: 5'- --cACgagCGcCAgcaaCGCCGCGCAGGCCc -3' miRNA: 3'- acaUGa--GCaGUac--GCGGCGCGUCUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 47536 | 0.7 | 0.773486 |
Target: 5'- --aGCUCGUCAggaaGgGCUGCGCGGgACg -3' miRNA: 3'- acaUGAGCAGUa---CgCGGCGCGUC-UGg -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 116967 | 0.7 | 0.764101 |
Target: 5'- gUGUcGCUUG-CAUugGCGgCGCGCAGACUc -3' miRNA: 3'- -ACA-UGAGCaGUA--CGCgGCGCGUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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