miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24503 3' -55.4 NC_005264.1 + 65872 0.67 0.880835
Target:  5'- cGCAGGGUGGGa-AGG-GCUGaCC-CCu -3'
miRNA:   3'- aCGUCCUAUCCgcUCCuUGAC-GGuGG- -5'
24503 3' -55.4 NC_005264.1 + 43263 0.67 0.887809
Target:  5'- cGCucGGGcAUAGGgGAGGGAacGCCGCg -3'
miRNA:   3'- aCG--UCC-UAUCCgCUCCUUgaCGGUGg -5'
24503 3' -55.4 NC_005264.1 + 96276 0.66 0.913396
Target:  5'- aGCAGGu--GGCGGcGGAGCUuGUggaaauCGCCg -3'
miRNA:   3'- aCGUCCuauCCGCU-CCUUGA-CG------GUGG- -5'
24503 3' -55.4 NC_005264.1 + 134457 0.66 0.924762
Target:  5'- -cCAGGAUcGGCauGGGGGACaauucUGCCGCa -3'
miRNA:   3'- acGUCCUAuCCG--CUCCUUG-----ACGGUGg -5'
24503 3' -55.4 NC_005264.1 + 155272 0.69 0.817482
Target:  5'- cGCGGGGUAGGCGgcGGGGACgaugaUGUaGCg -3'
miRNA:   3'- aCGUCCUAUCCGC--UCCUUG-----ACGgUGg -5'
24503 3' -55.4 NC_005264.1 + 12541 0.68 0.86622
Target:  5'- gGUAGGA---GCGGGGGGCguucGCCGCg -3'
miRNA:   3'- aCGUCCUaucCGCUCCUUGa---CGGUGg -5'
24503 3' -55.4 NC_005264.1 + 72253 0.67 0.894557
Target:  5'- cGCGGGcaAGGCGc-GAcCUGCCGCg -3'
miRNA:   3'- aCGUCCuaUCCGCucCUuGACGGUGg -5'
24503 3' -55.4 NC_005264.1 + 135449 0.66 0.924762
Target:  5'- cGCcuaagAGGGUagAGGCGAGGAucaucaauacguGCUccauuaGCCAUCa -3'
miRNA:   3'- aCG-----UCCUA--UCCGCUCCU------------UGA------CGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 81897 0.67 0.873637
Target:  5'- gGCGGcGAUGGGCGGGcGA---GCCAgCa -3'
miRNA:   3'- aCGUC-CUAUCCGCUC-CUugaCGGUgG- -5'
24503 3' -55.4 NC_005264.1 + 45771 0.66 0.930083
Target:  5'- aGaCAGcGAUGGGCGccGGAGCgGCUAUUg -3'
miRNA:   3'- aC-GUC-CUAUCCGCu-CCUUGaCGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 53192 0.67 0.887809
Target:  5'- aUGC-GGA-AGGUGGGGGACgugGCCGa- -3'
miRNA:   3'- -ACGuCCUaUCCGCUCCUUGa--CGGUgg -5'
24503 3' -55.4 NC_005264.1 + 97495 0.67 0.880835
Target:  5'- aGCGGuacaacauGAUAGauuGCcAGGAGCUGCCGCg -3'
miRNA:   3'- aCGUC--------CUAUC---CGcUCCUUGACGGUGg -5'
24503 3' -55.4 NC_005264.1 + 102184 0.67 0.901072
Target:  5'- cGCgacgaAGGAaacgagcAGGCGGGGAucaaGCUGCUGCUc -3'
miRNA:   3'- aCG-----UCCUa------UCCGCUCCU----UGACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 41851 0.66 0.907353
Target:  5'- gUGCauauGGGAgcucgGGGgGGGGGGCaacgGCCGCg -3'
miRNA:   3'- -ACG----UCCUa----UCCgCUCCUUGa---CGGUGg -5'
24503 3' -55.4 NC_005264.1 + 32353 0.66 0.921453
Target:  5'- cGgGGGGUGcuucggggcuguucuGGCGAGGAuGCcgGCgGCCg -3'
miRNA:   3'- aCgUCCUAU---------------CCGCUCCU-UGa-CGgUGG- -5'
24503 3' -55.4 NC_005264.1 + 28042 0.66 0.924762
Target:  5'- --aAGGAUugGGGCGAGGAuucgcgaugugcGCcaUGCgACCg -3'
miRNA:   3'- acgUCCUA--UCCGCUCCU------------UG--ACGgUGG- -5'
24503 3' -55.4 NC_005264.1 + 28874 0.7 0.743342
Target:  5'- cGCGGGcUAGGUuucauGAACUGCUGCCa -3'
miRNA:   3'- aCGUCCuAUCCGcuc--CUUGACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 13331 0.69 0.808718
Target:  5'- aGCAGGAggagaggGGcGCGAGGAugaACgucgggGCCgaGCCg -3'
miRNA:   3'- aCGUCCUa------UC-CGCUCCU---UGa-----CGG--UGG- -5'
24503 3' -55.4 NC_005264.1 + 84805 0.68 0.826075
Target:  5'- gGCAGGGcauGGCGcacGGAGCgaaGCuCGCCg -3'
miRNA:   3'- aCGUCCUau-CCGCu--CCUUGa--CG-GUGG- -5'
24503 3' -55.4 NC_005264.1 + 40307 0.68 0.858591
Target:  5'- gGC-GGAc-GGCGAGGAucccCUGCCccccGCCg -3'
miRNA:   3'- aCGuCCUauCCGCUCCUu---GACGG----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.