Results 1 - 20 of 203 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24507 | 3' | -57.9 | NC_005264.1 | + | 29898 | 1.11 | 0.001503 |
Target: 5'- aUGGCGGCGAAACGCCCUACUGCCAGCc -3' miRNA: 3'- -ACCGCCGCUUUGCGGGAUGACGGUCG- -5' |
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24507 | 3' | -57.9 | NC_005264.1 | + | 83735 | 0.8 | 0.177181 |
Target: 5'- cGGCGGCaGAGAUGCCCU-CUG-CGGCa -3' miRNA: 3'- aCCGCCG-CUUUGCGGGAuGACgGUCG- -5' |
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24507 | 3' | -57.9 | NC_005264.1 | + | 151541 | 0.8 | 0.1862 |
Target: 5'- gGGCGGCGuGGACGCCCUACc-CUGGCg -3' miRNA: 3'- aCCGCCGC-UUUGCGGGAUGacGGUCG- -5' |
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24507 | 3' | -57.9 | NC_005264.1 | + | 129611 | 0.8 | 0.176741 |
Target: 5'- cGGCGGCGAagcuucucgaguaGACGCCgaGCgccGCCAGCc -3' miRNA: 3'- aCCGCCGCU-------------UUGCGGgaUGa--CGGUCG- -5' |
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24507 | 3' | -57.9 | NC_005264.1 | + | 66200 | 0.78 | 0.237552 |
Target: 5'- cGGCgGGCGguGCGCCUccGCgGCCAGCg -3' miRNA: 3'- aCCG-CCGCuuUGCGGGa-UGaCGGUCG- -5' |
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24507 | 3' | -57.9 | NC_005264.1 | + | 116793 | 0.77 | 0.280187 |
Target: 5'- cGGaacaGGCGAuuGCGCCCUgGCaucgGCCAGCg -3' miRNA: 3'- aCCg---CCGCUu-UGCGGGA-UGa---CGGUCG- -5' |
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24507 | 3' | -57.9 | NC_005264.1 | + | 44240 | 0.77 | 0.286751 |
Target: 5'- aGcGCGGCGAAGuCGCCCaagUGCUGuUCGGCg -3' miRNA: 3'- aC-CGCCGCUUU-GCGGG---AUGAC-GGUCG- -5' |
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24507 | 3' | -57.9 | NC_005264.1 | + | 104927 | 0.77 | 0.255121 |
Target: 5'- aGGCGGCGGAACcCCCaGCcgUGCCAaGCg -3' miRNA: 3'- aCCGCCGCUUUGcGGGaUG--ACGGU-CG- -5' |
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24507 | 3' | -57.9 | NC_005264.1 | + | 95364 | 0.76 | 0.32139 |
Target: 5'- gGGCGGCGcgugcCGCCaaACUGCCAGg -3' miRNA: 3'- aCCGCCGCuuu--GCGGgaUGACGGUCg -5' |
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24507 | 3' | -57.9 | NC_005264.1 | + | 154819 | 0.75 | 0.336097 |
Target: 5'- cGGUGGCGccgucguggcGGGCGCCU--CUGCCGGCc -3' miRNA: 3'- aCCGCCGC----------UUUGCGGGauGACGGUCG- -5' |
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24507 | 3' | -57.9 | NC_005264.1 | + | 35793 | 0.75 | 0.336097 |
Target: 5'- cGGUGGCGccgucguggcGGGCGCCU--CUGCCGGCc -3' miRNA: 3'- aCCGCCGC----------UUUGCGGGauGACGGUCG- -5' |
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24507 | 3' | -57.9 | NC_005264.1 | + | 150639 | 0.75 | 0.343632 |
Target: 5'- aGGCGGCGcgcauCGCCCUGCgaccaUGCCucggGGCu -3' miRNA: 3'- aCCGCCGCuuu--GCGGGAUG-----ACGG----UCG- -5' |
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24507 | 3' | -57.9 | NC_005264.1 | + | 31612 | 0.75 | 0.343632 |
Target: 5'- aGGCGGCGcgcauCGCCCUGCgaccaUGCCucggGGCu -3' miRNA: 3'- aCCGCCGCuuu--GCGGGAUG-----ACGG----UCG- -5' |
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24507 | 3' | -57.9 | NC_005264.1 | + | 120500 | 0.75 | 0.359065 |
Target: 5'- aGGUGGCGGgggcGAgGCCCUcauagacaaacuGCuUGCCGGCa -3' miRNA: 3'- aCCGCCGCU----UUgCGGGA------------UG-ACGGUCG- -5' |
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24507 | 3' | -57.9 | NC_005264.1 | + | 39814 | 0.74 | 0.372559 |
Target: 5'- cUGGUgGGCGAGGaggcaugugcCGCCCUGCUuggcgguaaagccgGCCGGCg -3' miRNA: 3'- -ACCG-CCGCUUU----------GCGGGAUGA--------------CGGUCG- -5' |
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24507 | 3' | -57.9 | NC_005264.1 | + | 82364 | 0.74 | 0.414198 |
Target: 5'- uUGGCGGCGAAGCGgagcacuucgcacaCCaCcGCUGCCuucuGCa -3' miRNA: 3'- -ACCGCCGCUUUGC--------------GG-GaUGACGGu---CG- -5' |
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24507 | 3' | -57.9 | NC_005264.1 | + | 158840 | 0.74 | 0.372559 |
Target: 5'- cUGGUgGGCGAGGaggcaugugcCGCCCUGCUuggcgguaaagccgGCCGGCg -3' miRNA: 3'- -ACCG-CCGCUUU----------GCGGGAUGA--------------CGGUCG- -5' |
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24507 | 3' | -57.9 | NC_005264.1 | + | 145787 | 0.73 | 0.425484 |
Target: 5'- aUGGCGGuCGgcAUGCUCUuagcggccgcGCUGCUGGCg -3' miRNA: 3'- -ACCGCC-GCuuUGCGGGA----------UGACGGUCG- -5' |
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24507 | 3' | -57.9 | NC_005264.1 | + | 87182 | 0.73 | 0.4432 |
Target: 5'- cGGUuuacccaaucuGGCGA--CGCCCUGCUG-CAGCa -3' miRNA: 3'- aCCG-----------CCGCUuuGCGGGAUGACgGUCG- -5' |
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24507 | 3' | -57.9 | NC_005264.1 | + | 131048 | 0.73 | 0.47053 |
Target: 5'- cGGCGGCGAccgcCGCCCUuagGCgaagcGCCcGCg -3' miRNA: 3'- aCCGCCGCUuu--GCGGGA---UGa----CGGuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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