Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24507 | 5' | -53.4 | NC_005264.1 | + | 83226 | 0.66 | 0.963023 |
Target: 5'- gCCGUU-GCGCGuGGGCgucuaGGCCgcCGCUg -3' miRNA: 3'- -GGUAAuUGCGU-CCCG-----UCGGaaGCGAg -5' |
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24507 | 5' | -53.4 | NC_005264.1 | + | 154632 | 0.66 | 0.966047 |
Target: 5'- aCCAgcGGcCGCGGGGCAuaaugccagucacGCUgUUGCUCu -3' miRNA: 3'- -GGUaaUU-GCGUCCCGU-------------CGGaAGCGAG- -5' |
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24507 | 5' | -53.4 | NC_005264.1 | + | 109962 | 0.66 | 0.972417 |
Target: 5'- cCCugcugAugGCAGGuaccGCgAGCCUgccCGCUCg -3' miRNA: 3'- -GGuaa--UugCGUCC----CG-UCGGAa--GCGAG- -5' |
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24507 | 5' | -53.4 | NC_005264.1 | + | 119504 | 0.66 | 0.973525 |
Target: 5'- -----uGCGCAGGGCgugcuccgaggcggcAGCCcUCGCg- -3' miRNA: 3'- gguaauUGCGUCCCG---------------UCGGaAGCGag -5' |
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24507 | 5' | -53.4 | NC_005264.1 | + | 116666 | 0.66 | 0.963023 |
Target: 5'- ----gAugGCGGGGCGGCCgcCGaUCc -3' miRNA: 3'- gguaaUugCGUCCCGUCGGaaGCgAG- -5' |
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24507 | 5' | -53.4 | NC_005264.1 | + | 61911 | 0.66 | 0.969501 |
Target: 5'- gUAUUAgGCGCAcGGGC-GCCgcCGCUUg -3' miRNA: 3'- gGUAAU-UGCGU-CCCGuCGGaaGCGAG- -5' |
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24507 | 5' | -53.4 | NC_005264.1 | + | 144194 | 0.66 | 0.973525 |
Target: 5'- cUCAUUAgcauACGguGGGCGGCaccccaccacgucacUUUCGCa- -3' miRNA: 3'- -GGUAAU----UGCguCCCGUCG---------------GAAGCGag -5' |
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24507 | 5' | -53.4 | NC_005264.1 | + | 60625 | 0.66 | 0.969501 |
Target: 5'- gCCGgcucGCGCAGGaGCAGCa---GCUUg -3' miRNA: 3'- -GGUaau-UGCGUCC-CGUCGgaagCGAG- -5' |
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24507 | 5' | -53.4 | NC_005264.1 | + | 23715 | 0.67 | 0.951602 |
Target: 5'- cCCuc-AACGCccaaAGGGCAcacGCCgcCGCUCa -3' miRNA: 3'- -GGuaaUUGCG----UCCCGU---CGGaaGCGAG- -5' |
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24507 | 5' | -53.4 | NC_005264.1 | + | 35271 | 0.67 | 0.951602 |
Target: 5'- aCAcUGGCGCGGGcGCGGCCguggUCcugacuGUUCa -3' miRNA: 3'- gGUaAUUGCGUCC-CGUCGGa---AG------CGAG- -5' |
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24507 | 5' | -53.4 | NC_005264.1 | + | 55086 | 0.67 | 0.951602 |
Target: 5'- gCCAUUGACGCGGaGGCAaC--UCGCa- -3' miRNA: 3'- -GGUAAUUGCGUC-CCGUcGgaAGCGag -5' |
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24507 | 5' | -53.4 | NC_005264.1 | + | 26993 | 0.67 | 0.947321 |
Target: 5'- aCGUggcACGC-GGGUAGCCauucUCGCUUu -3' miRNA: 3'- gGUAau-UGCGuCCCGUCGGa---AGCGAG- -5' |
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24507 | 5' | -53.4 | NC_005264.1 | + | 85027 | 0.67 | 0.942798 |
Target: 5'- gCCAUgugcCGCGGGGCauucGGCaacgUCGCUa -3' miRNA: 3'- -GGUAauu-GCGUCCCG----UCGga--AGCGAg -5' |
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24507 | 5' | -53.4 | NC_005264.1 | + | 15726 | 0.67 | 0.938029 |
Target: 5'- gCAagAACGCGGcacGGCGGCCUg-GCUUg -3' miRNA: 3'- gGUaaUUGCGUC---CCGUCGGAagCGAG- -5' |
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24507 | 5' | -53.4 | NC_005264.1 | + | 146675 | 0.67 | 0.938029 |
Target: 5'- aCCucc-GCGCAGGGCGGCa-UUGC-Cg -3' miRNA: 3'- -GGuaauUGCGUCCCGUCGgaAGCGaG- -5' |
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24507 | 5' | -53.4 | NC_005264.1 | + | 108603 | 0.67 | 0.933013 |
Target: 5'- aCGUUGgcGCGCGGGGCcGCC-UCGaCa- -3' miRNA: 3'- gGUAAU--UGCGUCCCGuCGGaAGC-Gag -5' |
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24507 | 5' | -53.4 | NC_005264.1 | + | 122452 | 0.67 | 0.955643 |
Target: 5'- ----gGACGUAGGGCcgcGCCcgCGCUg -3' miRNA: 3'- gguaaUUGCGUCCCGu--CGGaaGCGAg -5' |
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24507 | 5' | -53.4 | NC_005264.1 | + | 158149 | 0.67 | 0.955643 |
Target: 5'- cCCGagaacguCGCAGaGCAGCUUUCGCa- -3' miRNA: 3'- -GGUaauu---GCGUCcCGUCGGAAGCGag -5' |
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24507 | 5' | -53.4 | NC_005264.1 | + | 12014 | 0.67 | 0.955643 |
Target: 5'- aCGUgauCGCaguuuucaGGGGCAGUCgcugCGCUCc -3' miRNA: 3'- gGUAauuGCG--------UCCCGUCGGaa--GCGAG- -5' |
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24507 | 5' | -53.4 | NC_005264.1 | + | 52717 | 0.67 | 0.951602 |
Target: 5'- cCCAaaAGCGCGGcGGCucucGGCCccugUCGUUCu -3' miRNA: 3'- -GGUaaUUGCGUC-CCG----UCGGa---AGCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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