miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24507 5' -53.4 NC_005264.1 + 2831 0.69 0.897709
Target:  5'- -gGUUGGCGgAGGGcCGGUCg-CGCUCg -3'
miRNA:   3'- ggUAAUUGCgUCCC-GUCGGaaGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 3425 0.67 0.955643
Target:  5'- ----gGACGUAGGGCcgcGCCcgCGCUg -3'
miRNA:   3'- gguaaUUGCGUCCCGu--CGGaaGCGAg -5'
24507 5' -53.4 NC_005264.1 + 5950 0.72 0.735399
Target:  5'- cCCuc--GCGCAGGGCAGCggcgcaUUCGCg- -3'
miRNA:   3'- -GGuaauUGCGUCCCGUCGg-----AAGCGag -5'
24507 5' -53.4 NC_005264.1 + 12014 0.67 0.955643
Target:  5'- aCGUgauCGCaguuuucaGGGGCAGUCgcugCGCUCc -3'
miRNA:   3'- gGUAauuGCG--------UCCCGUCGGaa--GCGAG- -5'
24507 5' -53.4 NC_005264.1 + 15726 0.67 0.938029
Target:  5'- gCAagAACGCGGcacGGCGGCCUg-GCUUg -3'
miRNA:   3'- gGUaaUUGCGUC---CCGUCGGAagCGAG- -5'
24507 5' -53.4 NC_005264.1 + 18407 0.73 0.663767
Target:  5'- aCCGUUccggccGGCGCAGGcGCGcCCUcUCGCUCg -3'
miRNA:   3'- -GGUAA------UUGCGUCC-CGUcGGA-AGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 23715 0.67 0.951602
Target:  5'- cCCuc-AACGCccaaAGGGCAcacGCCgcCGCUCa -3'
miRNA:   3'- -GGuaaUUGCG----UCCCGU---CGGaaGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 24872 0.7 0.837452
Target:  5'- aCCGga-GC-CGGGGCGGCacgaggCUUCGCUCu -3'
miRNA:   3'- -GGUaauUGcGUCCCGUCG------GAAGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 26993 0.67 0.947321
Target:  5'- aCGUggcACGC-GGGUAGCCauucUCGCUUu -3'
miRNA:   3'- gGUAau-UGCGuCCCGUCGGa---AGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 29936 1.03 0.011547
Target:  5'- uCCA-UAACGCAGGGCAGCCUUCGCUCa -3'
miRNA:   3'- -GGUaAUUGCGUCCCGUCGGAAGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 35271 0.67 0.951602
Target:  5'- aCAcUGGCGCGGGcGCGGCCguggUCcugacuGUUCa -3'
miRNA:   3'- gGUaAUUGCGUCC-CGUCGGa---AG------CGAG- -5'
24507 5' -53.4 NC_005264.1 + 52717 0.67 0.951602
Target:  5'- cCCAaaAGCGCGGcGGCucucGGCCccugUCGUUCu -3'
miRNA:   3'- -GGUaaUUGCGUC-CCG----UCGGa---AGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 55086 0.67 0.951602
Target:  5'- gCCAUUGACGCGGaGGCAaC--UCGCa- -3'
miRNA:   3'- -GGUAAUUGCGUC-CCGUcGgaAGCGag -5'
24507 5' -53.4 NC_005264.1 + 55341 0.68 0.916473
Target:  5'- gCGUUGuCGCucgcGGCGGCCUUCGUc- -3'
miRNA:   3'- gGUAAUuGCGuc--CCGUCGGAAGCGag -5'
24507 5' -53.4 NC_005264.1 + 60625 0.66 0.969501
Target:  5'- gCCGgcucGCGCAGGaGCAGCa---GCUUg -3'
miRNA:   3'- -GGUaau-UGCGUCC-CGUCGgaagCGAG- -5'
24507 5' -53.4 NC_005264.1 + 61911 0.66 0.969501
Target:  5'- gUAUUAgGCGCAcGGGC-GCCgcCGCUUg -3'
miRNA:   3'- gGUAAU-UGCGU-CCCGuCGGaaGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 67014 0.69 0.876785
Target:  5'- gCCug-GACGgAGcGGCGGCCUUgCGCa- -3'
miRNA:   3'- -GGuaaUUGCgUC-CCGUCGGAA-GCGag -5'
24507 5' -53.4 NC_005264.1 + 67627 0.71 0.811466
Target:  5'- gCCAcgcgGGCGCAGGGguGuCCUgCGCg- -3'
miRNA:   3'- -GGUaa--UUGCGUCCCguC-GGAaGCGag -5'
24507 5' -53.4 NC_005264.1 + 68248 0.69 0.89097
Target:  5'- gCCAUgcccGCGCcgcGGGCGGCCUgcuGCUg -3'
miRNA:   3'- -GGUAau--UGCGu--CCCGUCGGAag-CGAg -5'
24507 5' -53.4 NC_005264.1 + 76295 0.73 0.674154
Target:  5'- aCCAUcugGGCGCGGGGgGGCUgcuggcucaUUCGCUg -3'
miRNA:   3'- -GGUAa--UUGCGUCCCgUCGG---------AAGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.