miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24507 5' -53.4 NC_005264.1 + 29936 1.03 0.011547
Target:  5'- uCCA-UAACGCAGGGCAGCCUUCGCUCa -3'
miRNA:   3'- -GGUaAUUGCGUCCCGUCGGAAGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 18407 0.73 0.663767
Target:  5'- aCCGUUccggccGGCGCAGGcGCGcCCUcUCGCUCg -3'
miRNA:   3'- -GGUAA------UUGCGUCC-CGUcGGA-AGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 76295 0.73 0.674154
Target:  5'- aCCAUcugGGCGCGGGGgGGCUgcuggcucaUUCGCUg -3'
miRNA:   3'- -GGUAa--UUGCGUCCCgUCGG---------AAGCGAg -5'
24507 5' -53.4 NC_005264.1 + 116415 0.73 0.694813
Target:  5'- aCGUcgAGCGCAGGGCGGCgUgcagccUCGCg- -3'
miRNA:   3'- gGUAa-UUGCGUCCCGUCGgA------AGCGag -5'
24507 5' -53.4 NC_005264.1 + 124976 0.72 0.735399
Target:  5'- cCCuc--GCGCAGGGCAGCggcgcaUUCGCg- -3'
miRNA:   3'- -GGuaauUGCGUCCCGUCGg-----AAGCGag -5'
24507 5' -53.4 NC_005264.1 + 5950 0.72 0.735399
Target:  5'- cCCuc--GCGCAGGGCAGCggcgcaUUCGCg- -3'
miRNA:   3'- -GGuaauUGCGUCCCGUCGg-----AAGCGag -5'
24507 5' -53.4 NC_005264.1 + 112882 0.72 0.745337
Target:  5'- uCCGUaccuuCGUAGGGCAgGCC-UCGUUCa -3'
miRNA:   3'- -GGUAauu--GCGUCCCGU-CGGaAGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 93004 0.71 0.802453
Target:  5'- cCCAa----GCAGGGCGGCCUUCa--- -3'
miRNA:   3'- -GGUaauugCGUCCCGUCGGAAGcgag -5'
24507 5' -53.4 NC_005264.1 + 67627 0.71 0.811466
Target:  5'- gCCAcgcgGGCGCAGGGguGuCCUgCGCg- -3'
miRNA:   3'- -GGUaa--UUGCGUCCCguC-GGAaGCGag -5'
24507 5' -53.4 NC_005264.1 + 24872 0.7 0.837452
Target:  5'- aCCGga-GC-CGGGGCGGCacgaggCUUCGCUCu -3'
miRNA:   3'- -GGUaauUGcGUCCCGUCG------GAAGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 138839 0.69 0.869349
Target:  5'- aCCAUgGACGCGGGGaucuauGCCUUCuaUg -3'
miRNA:   3'- -GGUAaUUGCGUCCCgu----CGGAAGcgAg -5'
24507 5' -53.4 NC_005264.1 + 81611 0.69 0.876785
Target:  5'- gCCGcu-GCGcCAGGGaCGGCCgaUGCUCa -3'
miRNA:   3'- -GGUaauUGC-GUCCC-GUCGGaaGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 67014 0.69 0.876785
Target:  5'- gCCug-GACGgAGcGGCGGCCUUgCGCa- -3'
miRNA:   3'- -GGuaaUUGCgUC-CCGUCGGAA-GCGag -5'
24507 5' -53.4 NC_005264.1 + 76343 0.69 0.881855
Target:  5'- uCCAUgGGCGCuggAGGGCgAGCCUgaacccacugcuccUgGCUCa -3'
miRNA:   3'- -GGUAaUUGCG---UCCCG-UCGGA--------------AgCGAG- -5'
24507 5' -53.4 NC_005264.1 + 116876 0.69 0.89097
Target:  5'- cCCAUacAACGUgacGGCAGCCUcgUGCUCa -3'
miRNA:   3'- -GGUAa-UUGCGuc-CCGUCGGAa-GCGAG- -5'
24507 5' -53.4 NC_005264.1 + 68248 0.69 0.89097
Target:  5'- gCCAUgcccGCGCcgcGGGCGGCCUgcuGCUg -3'
miRNA:   3'- -GGUAau--UGCGu--CCCGUCGGAag-CGAg -5'
24507 5' -53.4 NC_005264.1 + 87123 0.69 0.89097
Target:  5'- uCCGgcgccCGCGGGGCgcaccAGUCUUCGCg- -3'
miRNA:   3'- -GGUaauu-GCGUCCCG-----UCGGAAGCGag -5'
24507 5' -53.4 NC_005264.1 + 2831 0.69 0.897709
Target:  5'- -gGUUGGCGgAGGGcCGGUCg-CGCUCg -3'
miRNA:   3'- ggUAAUUGCgUCCC-GUCGGaaGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 121857 0.69 0.897709
Target:  5'- -gGUUGGCGgAGGGcCGGUCg-CGCUCg -3'
miRNA:   3'- ggUAAUUGCgUCCC-GUCGGaaGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 107892 0.69 0.897709
Target:  5'- gCCAUUAGCGUguucAGGagccacucGCAGCCgUUCGC-Ca -3'
miRNA:   3'- -GGUAAUUGCG----UCC--------CGUCGG-AAGCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.